Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3658 120 3e-22 seq3618 96.9 4e-15 >seq3658 Length=1447888 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | ||||| || || ||||| ||||| || || |||||||| Sbjct 43705 TTCCTCCTCTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCG 43764 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || ||| || ||||| || || || || || | | ||||||||| || | Sbjct 43765 AAAGAGTTCTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 43824 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || ||||| ||||| || || |||||| || | |||||||| | |||| Sbjct 43825 GGATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCTCCA 43884 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || |||||||| || || || ||||| ||||| |||||||| Sbjct 43885 CCTCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCAT 43933 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CG 134543 |||| |||||||| || | ||||| || || || || ||||| || |||||||||| || Sbjct 41742 TTCCACCTCTGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 41801 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| |||| | || ||||| || || || || || || | | ||||||||| || Sbjct 41802 ACAA-GGTGCGTCCATCTTCGAGTTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTGGT 41860 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || ||||| || |||||||| || || || || | ||||| || | ||| Sbjct 41861 GGAATTCCTTCCTTGTCTTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGAGGCTTCG 41920 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| ||||| || ||||| | || || ||||| || ||||| Sbjct 41921 ACCTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 41970 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 |||||| | || || | ||||| || || || || |||||||| ||||||||||| | Sbjct 41013 TCCTCCACGAAGACGAAGAACGAGATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCCGA 41072 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| | || |||||||| || || || ||||||||||| || || || || | Sbjct 41073 CAA-GGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCTGGTG 41131 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || ||||| || | ||||| || | ||| | Sbjct 41132 GGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGA 41191 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || ||||| || || || | || || ||||| || ||||| Sbjct 41192 CCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 41240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||||||| || | || | ||| || || ||||||||||| || ||||| ||| Sbjct 43477 TTCCTCCTCTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGG 43536 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | || || || || || || || || || | | |||||||| || | Sbjct 43537 ACAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTG 43596 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || ||||| || | ||||| || | ||| | Sbjct 43597 GAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAA 43656 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | ||||| || ||||| || || || | || || ||||| ||||||||| Sbjct 43657 CCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCATT 43706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || | ||| || || || ||||| || ||||||||||| Sbjct 41242 CCTCCACGGAGACGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAG 41301 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || ||||| || || || || || || | | ||||| || || || Sbjct 41302 AGTGTACGTCCATCTTCGAGTTGCTTTCCAGCGAAGATAAGTCTTTGCTGGTCTGGTGGG 41361 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||| || || |||||| || | |||||||| | ||||| Sbjct 41362 ATTCCCTCTTTGTCTTGGATCTTGGCTTTGACATTTTCAATGGTGTCGGAAGCCTCCACC 41421 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | ||| || || || ||||| | ||| || ||||| ||||||||| Sbjct 41422 TCCAAAGTGATAGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCATT 41469 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | |||||| | || | || || ||||| || || || |||||||||||| | Sbjct 42245 CCTCCACGGAGTCGGAGGACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAA 42304 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || || || || || ||||| || | | |||||||| || || Sbjct 42305 AGAGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGAGGG 42364 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || || || || | ||||| || | ||| || Sbjct 42365 ATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAAGCTTCAACC 42424 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || ||||| |||||||| Sbjct 42425 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 42471 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || | | ||||||||| || || || ||||| || ||||||||||| Sbjct 42101 TTACCAGCAAAGATGAGTCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTG 42160 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | ||||| || | ||| || ||||| || ||||| || ||||| Sbjct 42161 GCCTTCACATTCTCGATGGTGTCAGAGGCTTCGACCTCGAGTGTGATGGTCTTTCCGGTG 42220 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | ||||| |||||||| ||||| Sbjct 42221 AGCGTTTTCACGAAAATCTGCAT 42243 >seq3618 Length=512689 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | |||||| | || | || || ||||| ||||| || |||||||||||| | Sbjct 495179 CCTCCACGGAGTCGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 495120 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || || || || || || || || | | |||||||| | || Sbjct 495119 AGAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGCTGGG 495060 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || ||||| || | |||||||| | ||| || Sbjct 495059 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACC 495000 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || ||||| | || || ||||| ||||||||| Sbjct 494999 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCATT 494952 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | |||||| | || | || || ||||| ||||| || |||||||||||| | Sbjct 509363 CCTCCACGGAGTCGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAA 509304 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || || || || | || || || | | |||||||| | || Sbjct 509303 AGAGTACGTCCATCCTCAAGTTGCTTTTCAGCGAAGATGAGTCTTTGCTGATCTGCTGGG 509244 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || ||||| || | |||||||| | ||| || Sbjct 509243 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACC 509184 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| || ||||| | || || ||||| ||||||||| Sbjct 509183 TCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCATT 509136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505375214848400