Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq3544 96.9 5e-15 seq265 93.3 6e-14 >seq3544 Length=228915 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 161292 GTATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTAC 161351 || |||| || | |||||| |||| || || || || ||| |||||||| |||| Sbjct 4195 GTTTGACTGAAAAAGTCCGTTTCTATCAAGCGTCGACTTCTGAATTGTATGGAAAAGTAC 4136 Query 161352 AAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTA 161411 |||||| ||||| | || | || || ||||| ||| |||||||||| | || || | Sbjct 4135 AAGAGATTCCACAAAGTGAGAAGACTCCATTCTATCCAAGATCTCCATACGCTGTTGCCA 4076 Query 161412 AACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTA 161471 | | ||||||||||||||||| ||||| | ||| || ||| || ||| Sbjct 4075 AGATGTATGGATATTGGATTGTGGTTAACTATCGTGAGGCGTACAACATGTTTGCATGTA 4016 Query 161472 GTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAG 161512 ||| ||||| ||||| |||||| ||||| | |||||| Sbjct 4015 ATGGAATTCTCTTCAATCATGAGAGTCCACGTAGAGGTGAG 3975 >seq265 Length=4024 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 161292 GTATGACAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTAC 161351 || |||| || | |||||| |||| || || || || ||| |||||||| || | Sbjct 3512 GTTTGACTGAAAAAGTCCGTTTCTATCAAGCGTCGACTTCTGAATTGTATGGAAAAGTGC 3571 Query 161352 AAGAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTA 161411 |||||| ||||| | || | || || ||||| ||| |||||||||| | || || | Sbjct 3572 AAGAGATTCCACAAAGTGAGAAGACTCCATTCTATCCAAGATCTCCATACGCTGTTGCCA 3631 Query 161412 AACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTA 161471 | | ||||||||||||||||| ||||| | ||| || ||| || ||| Sbjct 3632 AGATGTATGGATATTGGATTGTGGTTAACTATCGTGAGGCGTACAACATGTTTGCATGTA 3691 Query 161472 GTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAG 161512 ||| ||||| ||||| |||||| ||||| | |||||| Sbjct 3692 ATGGAATTCTCTTCAATCATGAGAGTCCACGTAGAGGTGAG 3732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729896114479600