Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3663 187 3e-42 >seq3663 Length=2118579 Score = 187 bits (206), Expect = 3e-42 Identities = 306/439 (70%), Gaps = 3/439 (1%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || || || || || | |||||||| || || || || ||| | ||||||||||||| Sbjct 1960493 GCTGGCTTCGTGCGCAAGTAGTACATTCCAGTCTTAAGGCCTTGCTTCCATCCGTAGAAG 1960434 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 ||||| || | | | || ||||| | || || |||||||| | |||||| | Sbjct 1960433 TGCATCGAAGTGATTGCAGCGTAGCTTGGTTTAGCCATGTGAATATTGAGAGATTGAGAT 1960374 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| ||||| ||||| | ||| || ||||| | || || |||||||| |||||| Sbjct 1960373 TGATCAATGAATGCTCCACGATCAGCAGCCATCTCAATGATTTCCTTTTGAGAGATTTCC 1960314 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG-CTCGTATTTT--GAATGGAT 68631 || | ||| | | | || || || ||| |||| | || | || || |||||||| Sbjct 1960313 CACACAGTGAGATAGAGCTCCTTAATGTCAGCTGGGATTTCTGGGATGTTCTGAATGGAT 1960254 Query 68632 CCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAA 68691 || | || ||| | ||||| || |||||| |||||||| |||||| ||| Sbjct 1960253 CCGTTGTTGGCTATGAGGCGGTTCTTCATTTCATCAGTCCACAATCCTCTCTCAACCAAA 1960194 Query 68692 ACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAA 68751 | | || | ||| ||||| ||||| || || || ||||| | || | ||||| || Sbjct 1960193 TCCTTGAGCATATGTGGATTGACTATCTGGAAGTCTCCAGAAAGAACACGACGAGAATAG 1960134 Query 68752 ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCA 68811 || || ||| ||||| || | || ||||| ||||| |||||||||||||| || ||| Sbjct 1960133 ATGTTTGAGGTGTATGGCTCAATCGACTCATTGTTTCCAAGAATTTGAGCAGTAGAAGCA 1960074 Query 68812 GTTGGCATAGGTGCCACCA 68830 |||||||| || |||| || Sbjct 1960073 GTTGGCATTGGAGCCATCA 1960055 Score = 179 bits (198), Expect = 5e-40 Identities = 472/718 (66%), Gaps = 2/718 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 |||||| || |||||||| ||||| | ||| || ||||| ||| ||||||| || Sbjct 1959079 TTCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCATTCGCATGGGCACATCAGAGA 1959020 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| | ||| | || || || ||||| || ||||| |||||||| ||||| | || Sbjct 1959019 CCAATTCTGATCCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGAGGAA 1958960 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 | || | | | | ||||| ||| || || || || | ||||| | Sbjct 1958959 CAAGTCACGAGCACGCTCCTCTTCTGGTCCAGTGTTCTTGCGGAGTGACACGAACTCGAA 1958900 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 || ||| | ||||||||| || || || || || | |||| || || || |||||||| Sbjct 1958899 AACATCGGCATGCCATGGCTCGAGGTAGATGGCGAATGCTCCTGGACGCTTGTTTCCTCC 1958840 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 ||||| | || | ||||||||||| ||||| | ||||| || || | || || || Sbjct 1958839 TTGATCGACATAACGAGCAGTGTTATTGTAGACACGAAGCATTGGTATGAGTCCGTTCGA 1958780 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACC 69875 | | || || ||||||| || | || | || ||||| || | | || || Sbjct 1958779 TGTTCCGTTAGTTCCAGCGATGACAGAACCGGTGGCACGAATCTTGTGGACATTGAGCCC 1958720 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 |||||||| || | || ||||| |||||||| | ||||| ||||| || || || Sbjct 1958719 GATTCCTCCAGCGCTCTTCGAGATGAGAGCACACTGCTTCAAAGTGTCGTAGATTCCAAG 1958660 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 || ||| || |||| | || | || || |||||||| || | ||||| Sbjct 1958659 AATCGAATCCTCGCTCATCGTCAGCAAGAAGCAAGACGACATTTGTGGACGGCATGTTCC 1958600 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGT 70055 | || || | || ||||| || ||||| | | || || | ||||||||| || Sbjct 1958599 AGAGTTGAAGAGAGTTGGAGAAGCATGAGTCATGTAGCGCTCCGACATCAGATTGTACGT 1958540 Query 70056 TTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATAT 70114 || || || | | || ||| | | | || ||||| || | |||||||||||||| | Sbjct 1958539 CTCGATGGCAGCAGCAATGTCCTCTCCG-TGGATTCCGATAGAAACACGCATCAACATCT 1958481 Query 70115 GCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTT 70174 | || || || || || ||| || || ||||| | ||||| || ||| ||||||| Sbjct 1958480 GTTGTGGCCGCTCAACGATTTCCTTGTTGATTTTGAGAAGGTAGGAACGTTCAAGAGTTT 1958421 Query 70175 TAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTT 70232 | || || || ||| |||| || | || | ||||| | || |||| || || || Sbjct 1958420 TGAATCCGAAGTAGGTGTAGGAGTAATCACGATCGTAGACGATCGCAGAGTTCAGCTT 1958363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686877288058800