Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_027365.1 Length=58076 Score E Sequences producing significant alignments: (Bits) Value seq1401 230 9e-56 seq2028 114 5e-21 >seq1401 Length=3734 Score = 230 bits (254), Expect = 9e-56 Identities = 411/591 (70%), Gaps = 22/591 (4%) Strand=Plus/Minus Query 2515 GCCGACAGGCATTGTCTCGACAGGCTTCTCGGCGGTTCGCGCGAC--GTGCCGCCACATG 2572 ||||| || || || ||||| |||| | ||||| ||| ||| ||||||| | ||| Sbjct 1422 GCCGAGTGGGATCGTGTCGACCGGCTGGCCCGCGGT--GCGGGACCAGTGCCGCAAGATG 1365 Query 2573 GGCCTGGGTTTCGACCGCTGGCAGGACGACCTCGG-CAAGCTGATCTGCGCGAAGCGTCC 2631 ||| | || |||| ||||||| | |||||| | || ||| ||| ||||| | Sbjct 1364 GGCGTCCGTCACGACGAATGGCAGGCAGGCCTCGGGCGCGC-GATGCTCGCCAAGCGCGC 1306 Query 2632 CGATGGGCTGTACGCCGCCGACATGTTCGGCATG------TCGATTCCGCGCCAGACCGG 2685 | || ||||||||||||| ||| |||||| ||||| |||||| ||| Sbjct 1305 CAGCGGACTGTACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGCCGCCAGGTCGG 1246 Query 2686 CAAGACGTACCTGCTGGGCGCGATCGTGTTCGCGCTGTGCGTGGCGGCCGTCGACCGGCC 2745 |||||||| | | || ||||| | ||||| || ||| | | || || | Sbjct 1245 CAAGACGTTCACCATCGGGTCGATCATCTTCGCCCTCTGCAT------CATCTTCCCGAA 1192 Query 2746 GCTGACCGTGATCTGGACGGCGCACCGCACCCGCACGGCCGCCGAGACGTTCAAGTCGAT 2805 ||| || || |||||||| ||||||| | ||||||| || |||||||||| ||||| | Sbjct 1191 GCTCACGGTCATCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGCT 1132 Query 2806 GCAGGGCTTCGCCAAGATGCCGCGCATCGAGCCGTACATCGAGAAGGTGTCGCTG-GCGC 2864 ||||||||||||| ||| || | | | ||| | ||| | || | ||| | | | Sbjct 1131 GCAGGGCTTCGCCCAGAAGCGGAAGGTGGCCCCGCATATCCGGCAGATC-CGCCGAGTGA 1073 Query 2865 GCGGTGAGGAAGCCG-TGATCTTCACCAACGGCTCCCGAATCCTGTTCGGCGCGCGTGAA 2923 ||| || | || | | | ||||| ||||||||||| ||| ||||||| || || || Sbjct 1072 ACGGGCAGCA-GCAGATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAG 1014 Query 2924 CGCGGTTTCGGTCGTGGTTTCGCCGGTGTCGACGTGCTGATCTTCGACGAGGCGCAGATT 2983 ||| ||||| || || ||||||||||||||||| || | ||| ||||||||||| Sbjct 1013 TCCGGCTTCGGCCGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATC 954 Query 2984 CTCACCGAGAACGCGATGGACGACATGGTGCCCGCGACGAACGCGGCACCTAACCCGCTC 3043 ||| | | || || | || |||||||||||||| || ||||| | ||||||||| Sbjct 953 CTCGGCAACAAGGCCCTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTC 894 Query 3044 ATCATCCTGGCCGGGACGCCGCCGAAGCCGACCGATCCCGGCGAAGTGTTC 3094 ||||||||| || || ||||| || ||| |||||||||| |||| Sbjct 893 ATCATCCTGATGGGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGTTC 843 >seq2028 Length=10780 Score = 114 bits (126), Expect = 5e-21 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 2890 CAACGGCTCCCGAATCCTGTTCGGCGCGCGTGAACGCGGTTTCGGTCGTGGTTTCGCCGG 2949 ||||||| | ||| |||||||||| ||||| |||| ||||| ||||| |||| || Sbjct 6611 CAACGGCAGCGTGATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGA 6552 Query 2950 TGTCGACGTGCTGATCTTCGACGAGGCGCAGATTCTCACCGAGAACGCGATGGACGACAT 3009 |||||| | | ||||||| ||||||||||| || |||||||| ||| |||| ||||| Sbjct 6551 GGTCGACATCGAGGTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACAT 6492 Query 3010 GGTGCCCGCGACGAAC 3025 ||| | ||||||||| Sbjct 6491 GGTCGCAGCGACGAAC 6476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185713506020520