Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_027381.1 Length=68365 Score E Sequences producing significant alignments: (Bits) Value seq210 125 3e-24 seq1630 113 2e-20 seq1544 86.0 3e-12 >seq210 Length=3885 Score = 125 bits (138), Expect = 3e-24 Identities = 253/383 (66%), Gaps = 0/383 (0%) Strand=Plus/Plus Query 55036 AGACACCACCAAAGAAGTTCTTCTTTTCTAAAGCGATATCGAGTACCTGCTTCTAATGCA 55095 ||||||||||| ||||| || ||||| | |||||||| || | |||||||| |||| Sbjct 1349 AGACACCACCAGAGAAGCTCCTCTTTCCGGAAGCGATAACGGCTTCCTGCTTCGGTTGCA 1408 Query 55096 GGACGTACTAGAACTTTTTGAGATTCTCTTACAAGTACTAAGGTTGTACCACTTAATAGC 55155 || || || ||||| ||| | | || ||| || ||||| || || || ||| Sbjct 1409 GGGCGAACAAGAACCCTTTCCGCCTGTCGGGTAAGCACACGAGTTGTCCCGCTCAACAGC 1468 Query 55156 TCTCCTTCATCAGAGTAGATAGCAGGTTGTACAGGTACTTCTTCATACTCTGCTNNNNNN 55215 || |||||||| || || || || || || || || | |||||||||||| | Sbjct 1469 TCCCCTTCATCCGAATAAATCGCTGGCTGAACCGGAATATCTTCATACTCTTCCGGTATA 1528 Query 55216 NNNNNNNNNNNNNNNNCAACAGCATCCCAAGAATCTAAACAGAAAGCACTGTATTTTCTC 55275 | | || ||||| ||||| | ||| || || |||||||| | | Sbjct 1529 TCTTCGTACTGTGCCTCCTCCGCTTCCCACGAATCCAGACAAAATGCGCTGTATTTCCGC 1588 Query 55276 CAATCCAGTCCATGTTTAGTCATGATATCAATTGCTGCTTGCACAGTAGGACCAGAATGT 55335 || ||||| || ||||| ||| | | || || || || || || || || | || Sbjct 1589 CAGTCCAGACCGTGTTTCTCCATCACCGCTATCGCGGCCTGGACTGTCGGCCCGGCGTGC 1648 Query 55336 AATCTGGCATCATCACCTTCTTCTTCAATTCGTTGTAACCATCTCCATACAGAAGGTAAA 55395 | | || || || || || || ||||||| |||||||| | ||| || || | Sbjct 1649 AGACGCGCGTCCTCGCCCTCCTCCTCAATTCTCTGTAACCAGCGCCACACGCCCGGAAGC 1708 Query 55396 CGAGCTATTTCTGCAAATGCAGC 55418 || ||||||||||||||||| || Sbjct 1709 CGTGCTATTTCTGCAAATGCCGC 1731 Score = 96.9 bits (106), Expect = 2e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 57158 TAACTCCACCTGTTACTGGTTGATGGATAAACATACGTAAACCATCTGGAGTTTCACAAA 57217 |||| || | | ||| || ||||| | |||||| | || | || || ||||| | Sbjct 3271 TAACCACATCGGATACAGGCTGATGCAGAAACATTCTGGTTCCCTGCGGCGTATCACAGA 3330 Query 57218 TACAGAATCCCTGACTTAAATTTTCTGCACCTTCAAAAATTCCTGAATAATCAATATCAT 57277 ||||||| |||||||| | ||| || ||||| |||||||| || | || |||||||| | Sbjct 3331 TACAGAACCCCTGACTCATATTATCCGCACCGTCAAAAATCCCGGCGTAGTCAATATCGT 3390 Query 57278 GTACAACTTTATGTTGTAGAGCTATATTATCAA 57310 | ||||||||||| || ||| | | || ||||| Sbjct 3391 GGACAACTTTATGCTGAAGAACCACATCATCAA 3423 >seq1630 Length=7310 Score = 113 bits (124), Expect = 2e-20 Identities = 250/370 (68%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 8646 GCAACAGATGGTTCTGCTGGTATTGATTTACGAGCCAATACAGTT-ATGCCATTCGAACT 8704 |||||| ||||| || ||| | || ||||| || | || | || |||| || | Sbjct 6240 GCAACAACAGGTTCAGCGGGTTTGGACTTACGTGCATGTGTAGAAGAAGCGATTCAAA-T 6298 Query 8705 TAAACCGGGAGAAACTACTCTGGTAAATACTGGTTTAGCTATCCATCTGGATGATGTTCA 8764 | |||| || ||||| |||| || || ||| | || || || | || ||| | | Sbjct 6299 TGAACCTGGTCAAACTGTGTTGGTTAAAACAGGTATGGCCATTTATATTGAAGATACTAA 6358 Query 8765 CTATGCAGGTATGATTTTACCTCGTTCTGGGTTAGGGCATAAACATGGTATTGTGCTTGG 8824 | ||| ||| | ||||||| ||||| || || || ||||| ||||| || || | || Sbjct 6359 TTTTGCTGGTCTAGTTTTACCACGTTCGGGCTTGGGCCATAAGCATGGGATCGTATTGGG 6418 Query 8825 AAATCTTACAGGTCTCATTGATAGTGATTATCAAGGGGAACTGATGGTAAGCCTCTGGAA 8884 || | || | |||||| ||||||||||| ||| ||||||| | ||||| Sbjct 6419 CAACTTGGTTGGCTTAATTGATTCAGATTATCAAGGCGAATTGATGGTTTCTGTTTGGAA 6478 Query 8885 TCGCTCTACAAAGC-CTTTTACTATTAATCCAGGTGACCGTATTGCTCAGTTAGTTATTG 8943 ||| | |||| | | |||||| | | |||||||| ||| | || |||| ||| | | Sbjct 6479 TCG-TGGTCAAACCACCTTTACTTTAGAACCAGGTGAGCGTTTAGCACAGTATGTTTTGG 6537 Query 8944 TGCCTGTAATGCAGCCTGAATTTGTTATAGTAGACTCTTTTGAAGCTACTGAAAGAGGCG 9003 |||||||| | || | |||||| ||| ||| |||||||| |||||| | || | Sbjct 6538 TGCCTGTAGTTCAAGCGCAATTTGATATTGTAAGTGAATTTGAAGCGACTGAACGTGGTG 6597 Query 9004 AAGGTGGTTT 9013 |||||||| Sbjct 6598 CTGGTGGTTT 6607 >seq1544 Length=7090 Score = 86.0 bits (94), Expect = 3e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 17585 GTTCAATTTAATACTGAAACAGACCTTATTATATCTGTAGGTGATTTAATTGACCGTGGT 17644 ||||||||||| ||||| || || | || ||||||| ||| | |||| |||||| Sbjct 6396 GTTCAATTTAACTTTGAAAAGGATCTATTGATTGCTGTAGGGGATATTGTTGATCGTGGT 6337 Query 17645 ACTCAAAACGTAGAGTGTTTACGTCTATTAAAAGAACCTTGGTTTAAAGCTGTTTTAGGT 17704 || | | | | ||||| | ||| | ||| ||||||||||||||||||||||| Sbjct 6336 CCTGACAGTTTGAAATGTTTGCATCTGCTTGCAGAGCCTTGGTTTAAAGCTGTTTTAGGC 6277 Query 17705 AATCATGAAGTAATG 17719 |||||||||| |||| Sbjct 6276 AATCATGAAGAAATG 6262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 218633420499620