Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3658 89.7 4e-13 >seq3658 Length=1447888 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||| ||||||||||| || | | || | || ||||| || || ||| Sbjct 42731 GTGGACTCCTTTTGGATATTGTAGTCCGACAAGGTCCGTCCATCCTCGAGTTGCTTTCCG 42790 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| ||||||| | ||| ||||| || || | |||||||| || ||||||| || Sbjct 42791 GCGAAAATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTG 42850 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | ||||| || || || || |||| || || || || || Sbjct 42851 ACGTTCTCGATGGTATCGGAAGCTTCGACCTCGAGGGTAATAGTCTTTCCAGTGAGGGTC 42910 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 42911 TTGACGAAGATCTGCAT 42927 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 ||||||| ||||| || |||||| | ||||| | ||| ||||| || || | ||||||| Sbjct 43777 CGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTT 43836 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || ||||||| ||| | | || | ||||| | || || || || | || | Sbjct 43837 TGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCTCCACCTCCAAGGTGA 43896 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAA 27259 | | ||| || |||| |||||||| ||||||||||| |||| |||| Sbjct 43897 TGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCATGATTGCTGAAAA 43945 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 ||||||| ||||| || |||||| | ||||| | ||| ||||| || || | || || | Sbjct 42543 CGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCT 42602 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || ||||||| ||| | | || | ||||| | |||||||| || || || | Sbjct 42603 TGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGA 42662 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 | | || || || || || ||||| |||||||||||| || Sbjct 42663 TGGTCTTTCCAGTGAGCGTCTTCACGAAGATTTGCATACCT 42703 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || ||||| |||||||| ||| || | || | || || Sbjct 43497 ACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGGACAAAGTACGTCCATCCTCA 43556 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || || ||| | ||||| | || ||||| || || | || || || || | Sbjct 43557 AGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 43616 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | ||||||||| || || || || | || Sbjct 43617 ATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCGAGGGTGATGGTCTTT 43676 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||| ||||||||||| Sbjct 43677 CCAGTGAGGGTCTTCACGAAGATTTGCAT 43705 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | |||||||| | || || ||||| || || ||||||||| Sbjct 42243 TGCCTCCACGGAGTCGGAGGACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGG 42302 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || | || || || || || || || | ||||| | || ||||| || | Sbjct 42303 AAAGAGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGAG 42362 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| |||| | | || | ||||| | ||||||| Sbjct 42363 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAAGCTTCAA 42422 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 | || || || || | || || || || || ||||| |||||||||||| || Sbjct 42423 CCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCATACCT 42475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424915393481040