Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_027996.1 Length=175720 Score E Sequences producing significant alignments: (Bits) Value seq1843 87.8 2e-12 >seq1843 Length=6993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 8922 GCCGTTGCTCATAAAATGAAACGCAAATGGATAGGCATAGAACAAATGGATTATATAGAA 8981 || || ||||| || ||| ||||| |||||| || || || |||||||| || || ||| Sbjct 5296 GCTGTCGCTCACAAGATGGGACGCAGATGGATTGGTATTGAGCAAATGGACTACATCGAA 5355 Query 8982 ACTATCACAAAAGAAAGACTCaaaaaaaGTCATAGAAGGTGAGCAAGGTGGTATCAGCAA 9041 ||| || |||| | || | |||||| | || ||||| ||||||||||| || Sbjct 5356 GATATAACCAAAGCTCG-CTTACTGAAAGTCCTTGAGGGTGAACAAGGTGGTATTTCTAA 5414 Query 9042 AGCAATAAATTGGCAAGGTGGTGGAAATTTTGTTTATGCTGAACT 9086 | | | |||||||||||||||| ||||||||| ||| || Sbjct 5415 ATCGGTGGATTGGCAAGGTGGTGGTTCATTTGTTTATTTTGAGCT 5459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562150210176000