Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3663 122 1e-22 seq3666 107 2e-18 >seq3663 Length=2118579 Score = 122 bits (134), Expect = 1e-22 Identities = 669/1066 (63%), Gaps = 67/1066 (6%) Strand=Plus/Minus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTG 110428 |||||||| || ||||| || ||||| |||||| |||| | ||||| |||| || ||| Sbjct 1960475 TAGTACATTCCAGTCTTAAGGCCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGA--TTG 1960418 Query 110429 GA-CATCG-TTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCC 110486 | | | | |||| | ||||| | || | | |||| ||| |||||||| | Sbjct 1960417 CAGCGTAGCTTGGTTTAGCCATGTGAATATTGAGAGATTGAGATTGATCAATGAATGCTC 1960358 Query 110487 CCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGA 110546 | || | || ||||| ||||||| ||||| |||||||| || ||| |||||| Sbjct 1960357 CACGATCAGCAGCCATCTCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAGA 1960298 Query 110547 GATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCA 110606 | | ||| || ||| ||||||| |||| ||| ||||| ||||| || || | | Sbjct 1960297 GCTCCTTAATGTCAGCTGGGATTTCTGGGATGTTCTGAATGGATCCGTTG---TTGGCTA 1960241 Query 110607 TGAGA---TCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGT 110663 |||| | |||||| || | | ||| | || ||| | || |||| | | Sbjct 1960240 TGAGGCGGTTCTTCATTTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATAT 1960181 Query 110664 GCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGT 110723 | ||||| || || || || | || | | |||||||||| |||| Sbjct 1960180 GTGGATTGACTATCTGGAAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTGT 1960121 Query 110724 ATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTG 110783 |||| |||| | ||||| || || | ||||| || || || || ||||||||||| | Sbjct 1960120 ATGGCTCAATCGACTCATTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGAG 1960061 Query 110784 CCATCAAAAGACTGTTACGAAGACCCT--------------------------------- 110810 |||||| ||||||||| || | || | Sbjct 1960060 CCATCAGAAGACTGTTGCGGATTCCGTGTCTGAAAAAATTTCAATTAAAATTATATTGTG 1960001 Query 110811 --TCTC------CTT--GATGCG--TTCCTTGAGAACATC---CCAGTCGTAGTTGAGC- 110854 |||| ||| | ||| || ||| ||| | | ||||||| | |||| | Sbjct 1960000 ATTCTCAATTCACTTACGTGGCGATTTTTTTGCGAAGAGCGGCCCAGTCGCA-TTGATCG 1959942 Query 110855 -TTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTC 110913 ||||| | || |||||||||| |||||||| |||| ||| | ||||| ||||| Sbjct 1959941 GTTGGTGTGACAC-CCCACATGTCGAACTGAAGTTGTCCTTTCGACACTGGAGATCCCTC 1959883 Query 110914 AAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTG 110973 | | || ||| | || | |||||||| || || || || |||| | |||| Sbjct 1959882 ATATGTCGAATATGGTCCGTCTCTCTCAGCCAACTCGCAACTGGCTTCCAAAGCAGCGTA 1959823 Query 110974 ATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTA 111033 || || ||||||||||| | || | || |||||| | ||| |||| || Sbjct 1959822 GTAGATCGTTTCAAAGATTCTCTTGTTGAGATCTCTGGCTTGTTTCGAAGTGAATGGATA 1959763 Query 111034 GCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCG 111093 || ||| || || ||| || || |||||||| || | ||||||||| | || || Sbjct 1959762 ACGCATCAACATGAAGCAATCAGCAAGTCCTTGAACTCCAAGACCAATAGGACGATGGCG 1959703 Query 111094 CATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAG 111153 ||| || || || || || ||||| || || | || || |||| ||| || Sbjct 1959702 CATGTTCGAGTTACGAGCTTCTTCAACTGGGTAGTAGTTGACATCGATGATCTTGTTGAG 1959643 Query 111154 ATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTC 111213 ||| || || | | || |||| ||| ||| || | |||| || | |||| Sbjct 1959642 ATTCTTCGTTATGACTTTGGTGACTTCGGCAAGCTTCTTGAAATCGAACTT---CTTCTC 1959586 Query 111214 TTCATTGACAT-ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCT 111272 | | |||| | || | || ||||| || || | |||||| ||||| ||||||| Sbjct 1959585 TGGAGTGACGTAACGATTCAA-AGCGATCGAAGCAAGATTGCAGACAGCGATCTCATCTG 1959527 Query 111273 TATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCT 111332 | ||| |||||| | ||||| || || | |||||| | ||| || || || | ||| | Sbjct 1959526 GAGCTGAGTACTCCATGATTTCAGTGCAGAGGTTGGAGCACTTGATGGTTCCGAGATTTT 1959467 Query 111333 TTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 ||||| ||| ||| ||||| |||||| ||||| || Sbjct 1959466 GCTGGTTGGACTTGCGATTGGCAGCATCTTTGTAGGTGATGTATGG 1959421 >seq3666 Length=2156258 Score = 107 bits (118), Expect = 2e-18 Identities = 272/410 (66%), Gaps = 8/410 (2%) Strand=Plus/Plus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||||||||| || || || || || ||| || ||||| || | |||||| || || Sbjct 154970 ATCAAAACGACCGGGACGTAGAAGAGCAGAATCGAGAATATCAACTCTATTAGTAGCAGC 155029 Query 11512 AATAACCACAATGCCAGTCTCATTGTCA---AAGCCATCCATCTCGGTGAGTAATTGATT 11568 |||||| | || | | || | | | || || ||||||||| || | |||||| Sbjct 155030 AATAACAATAACGGATGATTCGTCGGTAGTAAATCCGTCCATCTCGACCAGAAGTTGATT 155089 Query 11569 AATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAG---CACTGCGTTGCTTGCC 11625 || ||| | |||| ||| || | | ||| || || | | | || | || Sbjct 155090 AAGTGTGTTTTCTTGTTCAGAATGTCCACCCATTCCTCCTTTTCCTCCTCTTTTTCTACC 155149 Query 11626 CACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 11685 || || ||||| ||||||||||| | ||||||||| ||| | | || ||| || Sbjct 155150 AACAGCGTCAATTTCATCAATGAATAAAATACATGGAGAATTCTTTCTCGCCATTGAGAA 155209 Query 11686 GAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGA 11745 | || ||||| ||| | || |||||||||||||| || | ||| | | | || Sbjct 155210 CATGTCACGAACTCTTGCTGGTCCTACACCAACAAACATTTCAAGAAACTCGGATCCGGA 155269 Query 11746 G-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTC 11804 | || | |||||||| ||||||| ||| || || | ||| |||||||| || |||| Sbjct 155270 GACAGT-AATGAATGGCACATTTGCTTCTCCTGCCGTTGCTTTTGCGAGGAGAGTTTTTC 155328 Query 11805 CCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 | || || || || | |||| ||| ||| ||| || || || ||| Sbjct 155329 CTGTTCCAGGGGGTCCGGTCAGAATGGCTCCTTTGGGAATTTTAGCTCCA 155378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628003189032000