Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3663 150 2e-31 >seq3663 Length=2118579 Score = 150 bits (166), Expect = 2e-31 Identities = 687/1085 (63%), Gaps = 67/1085 (6%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 ||||||||| || ||||| || || |||||||| | || | ||||| || | | || Sbjct 1960476 GTAGTACATTCCAGTCTTAAGGCCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGA--TT 1960419 Query 117902 GGAGAG--GGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGT 117959 | || | | |||| | ||||| | || | | ||| |||||||| ||||| | Sbjct 1960418 GCAGCGTAGCTTGGTTTAGCCATGTGAATATTGAGAGATTGAGATTGATCAATGAATGCT 1960359 Query 117960 CCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAG 118019 || ||||| || ||||| ||||| | ||||| ||||||||||||||| ||| Sbjct 1960358 CCACGATCAGCAGCCATCTCAATGATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAG 1960299 Query 118020 AGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACC 118079 || | |||||| ||| ||||||| || ||| || || |||||| || ||| | Sbjct 1960298 AGCTCCTTAATGTCAGCTGGGATTTCTGGGATGTTCTGAATGGAT---CCGTTGTTGGCT 1960242 Query 118080 ATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGA 118136 |||| | | |||||| || | | ||| | || ||| | ||||| | | | Sbjct 1960241 ATGAGGCGGTTCTTCATTTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATA 1960182 Query 118137 TGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTG 118196 || |||||| | || || || | || || | |||||| || | ||| Sbjct 1960181 TGTGGATTGACTATCTGGAAGTCTCCAGAAAGAACACGACGAGAATAGATGTTTGAGGTG 1960122 Query 118197 TATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGT 118256 |||||||||| |||||||||| || | ||||| || || || || || ||||| || Sbjct 1960121 TATGGCTCAATCGACTCATTGTTTCCAAGAATTTGAGCAGTAGAAGCAGTTGGCATTGGA 1960062 Query 118257 GCCATGAGAAGGCTGTTACGGAGACCCT-----------TTTCCCT---AAT-------- 118294 ||||| ||||| ||||| |||| || | |||| | ||| Sbjct 1960061 GCCATCAGAAGACTGTTGCGGATTCCGTGTCTGAAAAAATTTCAATTAAAATTATATTGT 1960002 Query 118295 ---------------------GCG--TTCCTTG---AGAGCGTCCCAGTCGTAGTTGA-- 118326 ||| || ||| |||||| |||||||| | |||| Sbjct 1960001 GATTCTCAATTCACTTACGTGGCGATTTTTTTGCGAAGAGCGGCCCAGTCGCA-TTGATC 1959943 Query 118327 GCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCT 118386 | || || | | | |||||| || ||||| || |||| ||| |||| ||||||| Sbjct 1959942 GGTTGGTGTGACAC-CCCACATGTCGAACTGAAGTTGTCCTTTCGACACTGGAGATCCCT 1959884 Query 118387 CAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGT 118446 || ||||| |||||| || || ||| ||||| ||| | || || || | || |||| Sbjct 1959883 CATATGTCGAATATGGTCCGTCTCTCTCAGCCAACTCGCAACTGGCTTCCAAAGCAGCGT 1959824 Query 118447 GATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGA 118506 || || |||||||| || | || | | |||| | | ||| || | || Sbjct 1959823 AGTAGATCGTTTCAAAGATTCTCTTGTTGAGATCTCTGGCTTGTTTCGAAGTGAATG-GA 1959765 Query 118507 GTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGT 118565 ||| ||| || || ||| || || ||||| || || || ||||| || ||||| Sbjct 1959764 TAACGCATCAACATGAAGCAATCAGCAAGTCCTTGAACTCCAAGACCAATAGGACGATGG 1959705 Query 118566 CTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTT 118625 | ||| || || || ||||| || || || || | || |||||| | | | || Sbjct 1959704 CGCATGTTCGAGTTACGAGCTTCTTCAACTGGGTAGTAGTTGACATCGATGATCTTGTTG 1959645 Query 118626 AGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTC 118685 ||||| || || | || || |||| ||| |||||| | | |||| |||| | || Sbjct 1959644 AGATTCTTCGTTATGACTTTGGTGACTTCGGCAAGCTTCTTGAAATC-GAACTTC--TTC 1959588 Query 118686 TCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCC 118745 ||| | |||| || | | ||||| || || ||||| || |||| | ||||||| Sbjct 1959587 TCTGGAGTGACGTAACGATTCAAAGCGATCGAAGCAAGATTGCAGACAGCGATCTCATCT 1959528 Query 118746 TTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTC 118805 | | | |||||| || ||||| ||||| | ||| || | ||| ||||| || | || Sbjct 1959527 GGAGCTGAGTACTCCATGATTTCAGTGCAGAGGTTGGAGCACTTGATGGTTCCGAGATTT 1959468 Query 118806 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 118865 | || || ||||| || ||||| ||||| |||||||| || ||||| Sbjct 1959467 TGCTGGTTGGACTTGCGATTGGCAGCATCTTTGTAGGTGATGTATGGAAGTCCAGTCTCA 1959408 Query 118866 GTTTG 118870 |||| Sbjct 1959407 ATTTG 1959403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618406829285200