Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3663 140 4e-28 seq3649 93.3 5e-14 >seq3663 Length=2118579 Score = 140 bits (154), Expect = 4e-28 Identities = 683/1085 (63%), Gaps = 65/1085 (6%) Strand=Plus/Plus Query 104908 TCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAA 104967 ||||| |||||||| |||||||| |||||||| || || | ||| || Sbjct 1959402 TCAAATTGAGACTGGACTTCCATACATCACCTACAAAGATGCTGCCAATCGCAAGTCCAA 1959461 Query 104968 TCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTAC 105027 || | ||| | || |||||| | ||||| ||||| || |||||| |||| | | Sbjct 1959462 CCAGCAAAATCTCGGAACCATCAAGTGCTCCAACCTCTGCACTGAAATCATGGAGTACTC 1959521 Query 105028 AGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA 105087 || |||||||| ||||| || || || || || |||||| | || || Sbjct 1959522 AGCTCCAGATGAGATCGCTGTCTGCAATCTTGCTTCGATCGCTTTGAATCGTTACGTCAC 1959581 Query 105088 TCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAA 105147 |||||||| ||| || |||| | || || |||||| || ||| | || || Sbjct 1959582 TCCAGAGAAGAAG---TTCGATTTCAAGAAGCTTGCCGAAGTCACCAAAGTCATAACGAA 1959638 Query 105148 AAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAA 105207 || || |||| | || ||| || | ||||| ||||| |||||||| || || Sbjct 1959639 GAATCTCAACAAGATCATCGATGTCAACTACTACCCAGTTGAAGAAGCTCGTAACTCGAA 1959698 Query 105208 TATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG 105267 ||| | || ||||| |||||||| || ||||| || || || ||| ||||| | Sbjct 1959699 CATGCGCCATCGTCCTATTGGTCTTGGAGTTCAAGGACTTGCTGATTGCTTCATGTTGAT 1959758 Query 105268 TCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCAT 105327 || | |||| ||| | |||| | || |||| | | || ||||| || || Sbjct 1959759 GCGTTATCCATTCACTTCGAAACAAGCCAGAGATCTCAACAAGAGAATCTTTGAAACGAT 1959818 Query 105328 GTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAAC 105387 || |||| ||| | || || |||| |||||||| ||| || || |||||| || Sbjct 1959819 CTACTACGCTGCTTTGGAAGCCAGTTGCGAGTTGGCTGAGAGAGACGGACCATATTCGAC 1959878 Query 105388 CTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGAC 105447 | |||||| ||||||| || |||| ||||| || || ||||||| | | | || Sbjct 1959879 ATATGAGGGATCTCCAGTGTCGAAAGGACAACTTCAGTTCGACATGTGGGGTG-TCACAC 1959937 Query 105448 CAAGCT-TCACTACGACTGGGAAGCTCT---CAAGGAA--CGCATC--AAG------GAG 105493 ||| | ||| | |||||||| ||||| ||| || ||| | ||| ||| Sbjct 1959938 CAACCGATCAATGCGACTGGGCCGCTCTTCGCAAAAAAATCGCCACGTAAGTGAATTGAG 1959997 Query 105494 AAG-----------------------------------GGTCTTCGTAACAGTCTCCTCA 105518 || || | || |||||||| || | Sbjct 1959998 AATCACAATATAATTTTAATTGAAATTTTTTCAGACACGGAATCCGCAACAGTCTTCTGA 1960057 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578 |||||||||||||||| || || || || ||||| | || || ||||| | |||| | Sbjct 1960058 TGGCTCCAATGCCAACTGCTTCTACTGCTCAAATTCTTGGAAACAATGAGTCGATTGAGC 1960117 Query 105579 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACA 105638 | ||||| | ||||||||| | | || | ||||| || ||| ||||| Sbjct 1960118 CATACACCTCAAACATCTATTCTCGTCGTGTTCTTTCTGGAGACTTCCAGATAGTCAATC 1960177 Query 105639 AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC--- 105695 ||| | | | || | |||| || | ||| | | || |||||| | | Sbjct 1960178 CACATATGCTCAAGGATTTGGTTGAGAGAGGATTGTGGACTGATGAAATGAAGAACCGCC 1960237 Query 105696 TCATGGTGAA-AGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAG 105754 |||| | || | ||| | ||||||| || || || || ||| ||| |||||| Sbjct 1960238 TCATAGCCAACAACGGAT----CCATTCAGAACATCCCAGAAATCCCAGCTGACATTAAG 1960293 Query 105755 AAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGAT 105814 || | || | ||| || ||||||||| ||||| ||||||| ||||| || ||| Sbjct 1960294 GAGCTCTATCTCACTGTGTGGGAAATCTCTCAAAAGGAAATCATTGAGATGGCTGCTGAT 1960353 Query 105815 CGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCATGGAAAGTCCAA-CGAT 105873 ||||| |||||||||||| |||| | | ||| | ||||| | |||| | | Sbjct 1960354 CGTGGAGCATTCATTGATCAATCTCAATCTCTCAATATTCACATGGCTAAACCAAGCTAC 1960413 Query 105874 G-TCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGT 105932 | | ||| || |||| |||||| | ||| | |||||| | || || || || || |||| Sbjct 1960414 GCTGCAA--TCACTTCGATGCACTTCTACGGATGGAAGCAAGGCCTTAAGACTGGAATGT 1960471 Query 105933 ATTAC 105937 | ||| Sbjct 1960472 ACTAC 1960476 Score = 129 bits (142), Expect = 7e-25 Identities = 416/632 (66%), Gaps = 23/632 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||||| ||||| || | ||||| || || || || ||||||| | ||| | Sbjct 1958474 CCACAACAGATGTTGATGCGTGTTTCTATCGGAATCCACGGAGAGGACATTGCTGCTGCC 1958533 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| | |||||| | | | | ||| || | ||||| |||||| Sbjct 1958534 ATCGAGACGTACAATCTGATGTCGGAGCGCTACATGACTCATGCTTCTCCAACTCTCTTC 1958593 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || |||| ||| | || |||||||| ||||||| | | | | | ||||| Sbjct 1958594 AACTCTGGAACATGCCGTCCACAAATGTCGTCTTGCTTCTTGCTGACGATGAGCGAGGAT 1958653 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || || || ||||| | ||| | | | ||||||| | ||||| ||| | ||||| Sbjct 1958654 TCGATTCTTGGAATCTACGACACTTTGAAGCAGTGTGCTCTCATCTCGAAGAGCGCTGGA 1958713 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGA-CAAA 104520 || || ||| | | |||| | | | |||| ||| || ||| ||| | || Sbjct 1958714 GGAATCGGGCTCAATGTCCACAAGATTCGTGCCACCGGTTCT-GTCATCGCTGGAACTAA 1958772 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || ||| | || | || ||||||||||| || | || ||| || || ||||| Sbjct 1958773 CGGAACATCGAACGGACTCATACCAATGCTTCGTGTCTACAATAACACTGCTCGTTATGT 1958832 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 |||||| || ||||| | ||| | |||| |||| || ||||||||||| Sbjct 1958833 CGATCAAGGAGGAAACAAGCGTCCA---GGAGCATTCGCCATCTACCTCGAGCCATGGCA 1958889 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCA-AGGTGAC--GAGGAGGCGCG 104691 || ||| | | |||||| | || | | ||| | | ||| || |||| || Sbjct 1958890 TGCCGATGTTTTCGAGTTC---GTGTCACTCCGCAAGAACACTGGACCAGAAGAGGAGC- 1958945 Query 104692 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 |||| || || | ||| ||||||||||||||| ||||||||||||||| | || ||| Sbjct 1958946 GTGCTCGTGACTTGTTCCTCGCTCTCTGGATTCCGGATCTCTTCATGAAGCGTGTCGAGA 1959005 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCA-GACAAGGCACCTGGTCTCTCCGA-TGCCGT 104808 || | ||||||||||| | || ||| | || || || || || || ||| | Sbjct 1959006 AGGATCAGAATTGGTCTCTGATGTGCCCATGCGAATGC-CCAGGACTTGATGACTGCTG- 1959063 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGT 104840 ||| |||||||| ||||| |||||| | |||| Sbjct 1959064 GGGAGAGGAGTTCGAAGCTCTTTACGCCAAGT 1959095 >seq3649 Length=974952 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 94746 TCAA-AAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAAAGTCGCGTTCCTTTGCT 94803 |||| ||||| || || ||||||||||||||| | | |||| |||| | || || Sbjct 67428 TCAAGAAGAAGGCCGACTGGGCTATGAAGTGGATCTCGGACAAGAAGGCGT-CGTTCGCC 67486 Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 || || ||| |||| || || ||| || || ||||||||| ||| || ||| | | Sbjct 67487 GAACGTCTCATCGCCTTCGCCGCTGTCGAAGGAATCTTCTTCAGTGGATCGTTCGCCTCA 67546 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | ||||||||||||||||| ||||||||||| | |||||| ||||| ||| Sbjct 67547 ATCTTCTGGCTCAAGAAGCGAGGACTCATGCCAGGATTGACACACTCCAATGAGCTCATC 67606 Query 94924 TC 94925 || Sbjct 67607 TC 67608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583234042910800