Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3663 131 2e-25 seq3649 86.0 7e-12 >seq3663 Length=2118579 Score = 131 bits (144), Expect = 2e-25 Identities = 373/569 (66%), Gaps = 6/569 (1%) Strand=Plus/Minus Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 || || ||||| ||| ||||||||||| ||| | || |||||||| || || | Sbjct 1959051 AGTCCTGGGCATTCGCATGGGCACATCAGAGACCAATTCTGATCCTTCTCGACACGCTTC 1958992 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 |||||||| ||||| ||||| || || ||| | ||| || |||| ||| || | | Sbjct 1958991 ATGAAGAGATCCGGAATCCAGAGAGCGAGGAACAAGTCACGAGCACGCTCCTCTTC-TGG 1958933 Query 79444 CCCTG-GTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 || | |||| || || | || || | | ||||| ||||| ||||| || || Sbjct 1958932 TCCAGTGTTCTTGCGGAGTGACACGAACTCGAAAACATCGGCATGCCATGGCTCGAGGTA 1958873 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 ||||||||| | || |||||| || || || | ||| || || || ||||| || Sbjct 1958872 GATGGCGAATGCTCCTGGACGCTTGTTTCCTCCTTGATCGACATAACGAGCAGTGTTATT 1958813 Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACG--CCGTTCGTCCCGTTGATTCGT 79620 | | || || ||||| || | || |||| ||| | ||||| || || ||| Sbjct 1958812 GTAGACACGAAGCATTGGTATGAGTCCGT--TCGATGTTCCGTTAGTTCCAGCGATGACA 1958755 Query 79621 GTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATG 79680 | |||| | || ||||| || | | || ||||| || || | | ||| |||||| Sbjct 1958754 GAACCGGTGGCACGAATCTTGTGGACATTGAGCCCGATTCCTCCAGCGCTCTTCGAGATG 1958695 Query 79681 TGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACC 79740 | || |||| ||| | || |||||||| || ||||| || || |||| | | | Sbjct 1958694 AGAGCACACTGCTTCAAAGTGTCGTAGATTCCAAGAATCGAATCCTCGCTCATCGTCAGC 1958635 Query 79741 AGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCG 79800 | |||||| |||||| ||||| | || || | ||||||||| || || | || Sbjct 1958634 AAGAAGCAAGACGACATTTGTGGACGGCATGTTCCAGAGTTGAAGAGAGTTGGAGAAGCA 1958575 Query 79801 TGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCG 79860 || || | | | | |||||||| ||||||||| || | | | ||| || Sbjct 1958574 TGAGTCATGTAGCGCTCCGACATCAGATTGTACGTCTCGATGGCAGCAGCAATGTCCTCT 1958515 Query 79861 CCGTGGATGCCGACCGCGACGCGCATGAA 79889 |||||||| |||| | || ||||| || Sbjct 1958514 CCGTGGATTCCGATAGAAACACGCATCAA 1958486 Score = 123 bits (136), Expect = 3e-23 Identities = 264/391 (68%), Gaps = 4/391 (1%) Strand=Plus/Plus Query 19292 GGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 || |||||||| || | ||| |||| || | |||||| ||| | | || || |||||| Sbjct 1958663 GGAATCTACGACACTTTGAAGCAGTGTGCTCTCATCTCGAAGAGCGCTGGAGGAATCGGG 1958722 Query 19352 ATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCC 19411 || | | || || || | | ||| | ||| ||| || |||||| | | Sbjct 1958723 CTCAATGTCCACAAGATTCGTGCCACCGGTTCTGTCATCGCTGGAACTAACGGAACATCG 1958782 Query 19412 GACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGG 19471 |||| || | |||||||| || |||| ||| ||||| || | || ||| | || || Sbjct 1958783 AACGGACTCATACCAATGCTTCGTGTCTACAATAACACTGCTCGTTATGTCGATCAAGGA 1958842 Query 19472 GGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATG 19531 || ||| || || | |||||||||||||||||||||||||| || || || | Sbjct 1958843 GGAAACAAGCGTCCAGGAGCATTCGCCATCTACCTCGAGCCATGGCATGCCGATGTTTTC 1958902 Query 19532 GATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGC-TG-TCGCGACCTCT 19589 || ||| | ||| ||| |||| | ||| || ||| | || || ||| ||| | | Sbjct 1958903 GAGTTCGTGTCACTCCGCAAGAACACTG--GACCAGAAGAGGAGCGTGCTCGTGACTTGT 1958960 Query 19590 TCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGC 19649 || || | ||||||||||| || |||||| || || |||||||| | | ||| Sbjct 1958961 TCCTCGCTCTCTGGATTCCGGATCTCTTCATGAAGCGTGTCGAGAAGGATCAGAATTGGT 1959020 Query 19650 ACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680 ||||||||||| ||||||||| || || Sbjct 1959021 CTCTGATGTGCCCATGCGAATGCCCAGGACT 1959051 >seq3649 Length=974952 Score = 86.0 bits (94), Expect = 7e-12 Identities = 124/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 59931 AAAGCAGAATGGGCCATGCAGTGGATGA--GTCCTGGAG-CATCATTTGCACAACGTCTC 59987 || || || ||||| ||| ||||||| | | | || | || || || |||||||| Sbjct 67436 AAGGCCGACTGGGCTATGAAGTGGATCTCGGACAAGAAGGCGTCGTTCGCCGAACGTCTC 67495 Query 59988 ATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGG 60047 || || || || || ||||||||||||||| ||| |||||| | || |||||| Sbjct 67496 ATCGCCTTCGCCGCTGTCGAAGGAATCTTCTTCAGTGGATCGTTCGCCTCAATCTTCTGG 67555 Query 60048 CTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTC 60100 ||||| ||||| || |||||||| || ||| |||||| ||||| || || Sbjct 67556 CTCAAGAAGCGAGGACTCATGCCAGGATTGACACACTCCAATGAGCTCATCTC 67608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548499636424800