Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3663 158 1e-33 seq3649 82.4 8e-11 seq3544 82.4 8e-11 seq3189 82.4 8e-11 >seq3663 Length=2118579 Score = 158 bits (174), Expect = 1e-33 Identities = 338/494 (68%), Gaps = 12/494 (2%) Strand=Plus/Plus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 ||| | || || || | ||||| || |||||| |||| || | || || |||||| Sbjct 1958564 TACATGACTCATGCTTCTCCAACTCTCTTCAACTCTGGAACATGCCGTCCACAAATGTCG 1958623 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||| || || |||||| || || ||||| || |||||||| || | ||| Sbjct 1958624 TCTTGCTTCTTGCTGACGATGAGCGAGGATTCGATTCTTGGAATCTACGACACTTTGAAG 1958683 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGT 53449 ||||||| | |||||| ||| | | || || ||||| || | | || | ||| Sbjct 1958684 CAGTGTGCTCTCATCTCGAAGAGCGCTGGAGGAATCGGGCTCAATGTCCACAAGATTCGT 1958743 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGCCGATGGAATCGTGCCTATGC 53507 || | ||| | ||| || || ||||| | ||| | ||| || | || |||| Sbjct 1958744 GCCACCGGTTCTGTCATCGCTGGAACTAACGGAACATCGA--ACGGACTCATACCAATGC 1958801 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGG 53566 | || |||| ||| ||||| || || || ||| | || || || ||||| | ||| | Sbjct 1958802 TTCGTGTCTACAATAACACTGCTCGTTATGTCGATCAAGGAGGAAACAAGCGTCCAGGAG 1958861 Query 53567 TCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGT 53626 | |||||||||||||||||||| ||||| ||||| || | ||||| | || || Sbjct 1958862 -CATTCGCCATCTACCTCGAGCCATGGCATGCCGATGTTTTCGAGTTCGTGTCACTCCGC 1958920 Query 53627 CTGAATCAGGGTGAC--GAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATT 53683 ||| || | ||| |||||| ||| ||| |||||| |||| ||||| |||||| Sbjct 1958921 AAGAA-CACTG-GACCAGAAGAGGAGCG-TGCTCGTGACTTGTTCCTCGCTCTCTGGATT 1958977 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 ||||| ||||||||| | || |||||||| || | |||| ||||||||||| | Sbjct 1958978 CCGGATCTCTTCATGAAGCGTGTCGAGAAGGATCAGAATTGGTCTCTGATGTGCCCATGC 1959037 Query 53744 GAGTGCCCCGGCCT 53757 || ||||| || || Sbjct 1959038 GAATGCCCAGGACT 1959051 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/198 (70%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 55730 AAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCT 55789 |||||| | || | || |||||||| || | || ||| | ||||| ||| |||| Sbjct 1960291 AAGGAGCTCTATCTCACTGTGTGGGAAATCTCTCAAAAGGAAATCATTGAGATGGCTGCT 1960350 Query 55790 GATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC---- 55845 |||||||| || | ||| || || || || ||||| || || ||||| || || Sbjct 1960351 GATCGTGGAGCATTCATTGATCAATCTCAATCTCTCAATATTCACATGGCTAAACCAAGC 1960410 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | | ||| ||| | | ||||||||||| ||||| |||||| | || || ||||| || Sbjct 1960411 TACGCTG--CAA--TCACTTCGATGCACTTCTACGGATGGAAGCAAGGCCTTAAGACTGG 1960466 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| |||| || Sbjct 1960467 AATGTACTACTTGCGCAC 1960484 >seq3649 Length=974952 Score = 82.4 bits (90), Expect = 8e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAG 74867 || ||||| ||||| |||||||| | ||| ||||| | ||| || |||||||||||| Sbjct 67581 CCTGGCATGAGTCCTCGCTTCTTGAGCCAGAAGATTGAGGCGAACGATCCACTGAAGAAG 67522 Query 74868 ATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACG 74910 || ||||||||| || ||||||| || |||| ||||||| Sbjct 67521 ATTCCTTCGACAGCGGCGAAGGCGATGAGACGTTCGGCGAACG 67479 >seq3544 Length=228915 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 158964 CTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGC 159023 || |||||| |||||||||||||| |||||| | |||||||| || |||||| || Sbjct 3702 CTTTCCAGTGGCAATCACAAAGTCATCTGGAGCATCATGTTGGAGGATTCTCCACATAGC 3761 Query 159024 CTCGACGTAATC-CTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGCTCGA 159082 |||||||| || ||| ||||| ||||| || || ||| || ||| ||||| |||| Sbjct 3762 TTCGACGTACTCTCTG-GCGTGTCCCCAATCACGGAGAGCACTCAGGTTTCCGAGTTCGA 3820 Query 159083 TG 159084 || Sbjct 3821 TG 3822 >seq3189 Length=10796 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 158964 CTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGC 159023 || |||||| |||||||||||||| |||||| | |||||||| || |||||| || Sbjct 8907 CTTTCCAGTGGCAATCACAAAGTCATCTGGAGCATCATGTTGGAGGATTCTCCACATAGC 8848 Query 159024 CTCGACGTAATC-CTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGCTCGA 159082 |||||||| || ||| ||||| ||||| || || ||| || ||| ||||| |||| Sbjct 8847 TTCGACGTACTCTCTG-GCGTGTCCCCAATCACGGAGAGCACTCAGGTTTCCGAGTTCGA 8789 Query 159083 TG 159084 || Sbjct 8788 TG 8787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547190896466000