Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3658 122 8e-23 >seq3658 Length=1447888 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| ||| | || |||||||| || ||| | || Sbjct 41970 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTCGAAGCCTCT 41911 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||||||||| ||||| || ||||| ||||| Sbjct 41910 GACACCATTGAAAATGTGAAGGCTAAGATTCAAGACAAGGAAGGAATTCCACCAGATCAG 41851 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || ||| | ||||| | ||| | || || |||||| Sbjct 41850 CAGAGACTCATCTTCGCTGGAAAGCAACTCGAAGATGGACGCACCTTGTCGGACTACAAC 41791 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | ||| | ||| | ||| | | ||||| || Sbjct 41790 ATCCAGAAGGAGTCGACCCTTCATCTCGTTCTCCGTCTCAGAGGTGGAAT 41741 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || || || || || ||| | || Sbjct 41240 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 41181 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || |||||||| ||||| || ||||| || ||| Sbjct 41180 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAA 41121 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||| || || | || || | |||| | || || |||||| Sbjct 41120 CAACGTTTGATTTTCGCCGGAAAGCAGCTCGAGGATGGACGGACCTTGTCGGACTACAAC 41061 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| || | ||| | ||| | ||| | || || || Sbjct 41060 ATCCAAAAGGAGTCAACTCTTCATCTCGTTCTTCGTCTTCGTGGAGG 41014 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| ||||||| || || || ||| | ||| Sbjct 42927 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACTATTACCCTCGAGGTCGAAGCTTCC 42868 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| || || ||||||||||| || || ||||| ||||| Sbjct 42867 GATACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 42808 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| || ||| | || || | |||| | || || ||||| Sbjct 42807 CAGAGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGACGGACCTTGTCGGACTACAAT 42748 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | ||| | ||| | ||| | || || || || Sbjct 42747 ATCCAAAAGGAGTCCACTCTTCATCTCGTTCTCCGTCTTCGTGGAGGTAT 42698 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| ||||| ||| |||| ||| | || ||||| | ||| Sbjct 41468 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACTATCACTTTGGAGGTGGAGGCTTCC 41409 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || ||||||||||| || || ||||| || || Sbjct 41408 GACACCATTGAAAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAG 41349 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || || ||| | ||||| | || | || || |||||| Sbjct 41348 CAAAGACTTATCTTCGCTGGAAAGCAACTCGAAGATGGACGTACACTCTCTGACTACAAC 41289 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || |||||| | ||| | || || || || Sbjct 41288 ATCCAGAAGGAGTCTACTCTTCACTTGGTTCTCCGTCTCCGTGGAGGTAT 41239 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| |||| || || | || || | || ||||| | || Sbjct 43934 CATGCAAATCTTCGTGAAAACGTTGACTGGAAAAACCATCACCTTGGAGGTGGAGGCTTC 43875 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| |||||| || || ||||||||||| || || ||||| ||||| Sbjct 43874 CGACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCA 43815 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | |||||| || || | |||||| | || |||| || ||||| Sbjct 43814 GCAGAGACTCATCTTCGCCGGAAAGCAGCTTGAAGACGGAAGAACTCTTTCGGACTACAA 43755 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 || || |||||||| || | ||| | ||| | ||| Sbjct 43754 TATCCAGAAGGAGTCCACTCTTCATCTCGTTCTCCGT 43718 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || || ||| |||| || || ||||||||| | ||| Sbjct 43477 ATGCAGATCTTCGTCAAGACTCTTACTGGAAAGACTATCACACTCGAAGTGGAAGCTTCC 43418 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| ||| || ||||||||||| || || ||||| |||||| Sbjct 43417 GACACAATCGAGAACGTCAAGGCAAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAA 43358 Query 27108 CA 27109 || Sbjct 43357 CA 43356 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || || ||| |||| || || ||||||||| | ||| Sbjct 43202 ATGCAGATCTTCGTCAAGACTCTTACTGGAAAGACTATCACACTCGAAGTGGAAGCTTCC 43143 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| ||| || ||||||||||| || || ||||| ||||| Sbjct 43142 GACACAATCGAGAACGTCAAGGCAAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAG 43083 Query 27108 CA 27109 || Sbjct 43082 CA 43081 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| | || || || || || ||| | || Sbjct 43705 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCCTCG 43646 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || || |||||||| ||||| || ||||| ||||| Sbjct 43645 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 43586 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | ||| || || ||| | || || | || | ||||||||||| Sbjct 43585 CAAAGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTTTGTCCGATTACAAT 43526 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 || |||||||| || || | || |||||| | ||| Sbjct 43525 ATCCAAAAGGAATCTACACTCCACTTGGTTCTCCGT 43490 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| | || || || ||||| ||| | || Sbjct 41742 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCG 41683 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || ||||||||||| ||||| || ||||| ||||| Sbjct 41682 GACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 41623 Query 27108 CA 27109 || Sbjct 41622 CA 41621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434898448118400