Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028659.1 Length=142987 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 >seq2 Length=2260 Score = 100 bits (110), Expect = 3e-16 Identities = 122/165 (74%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 101492 TTTCCCGGTGTACTTGCATCCTGAAACCAAAGAAGAATACGCACTGGCCCGTACTGAGCG 101551 |||||| |||| || ||||| |||| ||||||||||| || || |||||||||||||| Sbjct 200 TTTCCCTGTGTTTTTACATCCCAAAACAAAAGAAGAATATGCCCTAGCCCGTACTGAGCG 259 Query 101552 TAAAACTGGTGAAGGCCATACTGGCTTTGAGACCTTCTTCAGC---CCGGATGTAACTCT 101608 |||| | || | || || | | |||||| || || | | || ||||| || | Sbjct 260 TAAATCAGGACACGGTTATCATAGATTTGAG---TTTTTTACCGATCCAGATGTCACCTT 316 Query 101609 GGAAGAGGATTTATCGCGTCGTGACCTGACGATCAATGCGATGGC 101653 |||||||||||| ||||||||| | || |||||||| || || Sbjct 317 AGAAGAGGATTTAATTCGTCGTGACTTAACCATCAATGCCATTGC 361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 457409415380400