Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq1977 2414 0.0 >seq1977 Length=7279 Score = 2414 bits (2676), Expect = 0.0 Identities = 1761/2040 (86%), Gaps = 2/2040 (0%) Strand=Plus/Plus Query 967 TGGCCTGTTCGCTTTGCCTGTTTAACAAAGAGATGGTCATCGGCTTTGGTTCCCGTAAAG 1026 ||||||| |||||||| || | |||||||| ||||| ||||| || || |||||||||| Sbjct 3 TGGCCTGCTCGCTTTGTCTCTC-AACAAAGAAATGGTTATCGGTTTCGGCTCCCGTAAAG 61 Query 1027 AGGAATATGTCGACAGTACTGGTGACCCTAAGGCGCTGCTCTGGAAGGCGCGCAAGTTTG 1086 ||||||| |||||||| || |||||||| || || || ||||||||||||||||||| | Sbjct 62 AGGAATACGTCGACAGCACCGGTGACCCGAAAGCATTGTTCTGGAAGGCGCGCAAGTTCG 121 Query 1087 TGGAGACGCTGCCCGTCGAGTTTCGTGGGTCATGGAATGAGAAGAAGCATGCACCGTACA 1146 |||| || || || || |||||||| || || |||| ||||||||||| || || || | Sbjct 122 TGGAAACACTACCTGTAGAGTTTCGCGGTTCGTGGAGCGAGAAGAAGCACGCGCCATATA 181 Query 1147 TGCGTGTTGAATTTCCTGAGACAGGCGCGGTCATCAAGGGCGAGGCTGGTGACAATATTG 1206 |||||||||| |||||||| || || || || ||||| ||||||||||| || ||||||| Sbjct 182 TGCGTGTTGAGTTTCCTGAAACTGGTGCCGTTATCAAAGGCGAGGCTGGCGATAATATTG 241 Query 1207 GACGTGGTGACCGAACCACACTCTATCTGGTGGATGAGGCTGCATTTCTGCAACGCCCGC 1266 | ||||||||||| ||||| || |||||||| |||||||||||||| || || || || | Sbjct 242 GTCGTGGTGACCGTACCACGCTTTATCTGGTTGATGAGGCTGCATTCCTTCAGCGTCCTC 301 Query 1267 TACTGATTGATGCGGCGTTATCGCAAACCACCCGTTGCCGTATTGACCTGAGTTCGGTCA 1326 | ||||||||||||||||| || ||||| || ||||||||||||||||||||||| || | Sbjct 302 TGCTGATTGATGCGGCGTTGTCACAAACGACGCGTTGCCGTATTGACCTGAGTTCAGTTA 361 Query 1327 ACGGCATGGCGAACCCGTTTGCGCAGAAACGCCACGGCGGAAAGATACCGGTATTCACAT 1386 ||||||||||||||||||| || ||||| || || ||||| ||||||||||||||||||| Sbjct 362 ACGGCATGGCGAACCCGTTCGCTCAGAAGCGTCATGGCGGGAAGATACCGGTATTCACAT 421 Query 1387 TCCACTGGCGCAGCGACCCCCGTAAGGATGATGAGTGGTATCGCAGGGAATGCGAGAAAA 1446 |||||||||| || || || |||||||| |||||||||||||||||||||||||||| Sbjct 422 TCCACTGGCGGGATGATCCTCGCAAGGATGAAGAGTGGTATCGCAGGGAATGCGAGAAAA 481 Query 1447 TCGACAATCCGGTGGTAGTGGCTCAGGAGCTTGACCTGAACTACAGCGCATCAGCGGAAG 1506 |||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||| Sbjct 482 TCGATAATCCGGTGGTGGTGGCACAGGAACTTGATCTGAACTACAGCGCATCAGCGGAAG 541 Query 1507 GTGTCATGATCCCCTCAGACTGGGTACAGGCTGCTGTTGATGCACATATCAGGCTGGGCA 1566 | ||| |||| || || || |||||||||||||| |||||||||||||||| ||||| | Sbjct 542 GCGTCCTGATTCCATCCGAATGGGTACAGGCTGCCGTTGATGCACATATCAAACTGGGTA 601 Query 1567 TCCAGCCAACTGGCAAACGACTGGGCGCGATGGACGTTGCCGACGAAGGTCGGGACAAAA 1626 |||||||||| ||||||||||| ||||||||||| || ||||||||||| ||||||||| Sbjct 602 TCCAGCCAACAGGCAAACGACTTGGCGCGATGGATGTCGCCGACGAAGGCAGGGACAAAA 661 Query 1627 ACGCCTTTTCGACCCGTCACGGTTTTCTTCTGGAGAACGTGCGGGAATGGTCCGGCGTGG 1686 | || ||||| ||||||| || || || ||||| || ||||||||||||||||| |||| Sbjct 662 ATGCATTTTCCCCCCGTCATGGCTTCCTCCTGGAAAATGTGCGGGAATGGTCCGGTGTGG 721 Query 1687 GCAGCGACATTTACCAGTCTGTTGAGAAGGTCTTCGGCTTTTGTGAACAGGATAACATCG 1746 |||| |||||||| ||||| || |||||||| ||||| ||||| |||||||| ||| ||| Sbjct 722 GCAGTGACATTTATCAGTCCGTCGAGAAGGTTTTCGGTTTTTGCGAACAGGACAACCTCG 781 Query 1747 AAGAGTTTCGCTTCGACGAAGACGGTCTGGGCGCTGGCGTTCGCGGCGATGCGCGCGCCA 1806 ||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||| | Sbjct 782 AAGAGTTTCGCTT-GACGAGGACGGGCTGGGCGCTGGCGTTCGCGGCGATGCACGCGCTA 840 Query 1807 TTAACGAGTTACGCAAAGCTGCCCGCAGGCCGCCAATACTTGCCACACCGTTTCGCGGTA 1866 | ||||| | || || | ||| || | ||| ||||||| |||||||||||||| |||| Sbjct 841 TCAACGAACTGCGTAACGTTGCGCGTCGACCGTCAATACTCGCCACACCGTTTCGAGGTA 900 Query 1867 GCGGCGCGGTATTCGATCCTGATGACGAAGCCGTACGGGGCGACAATGGGCAGGCCGCAC 1926 | ||||||||||| ||||| ||||| ||||| || || || ||||| ||||| ||||||| Sbjct 901 GTGGCGCGGTATTTGATCCAGATGATGAAGCTGTTCGCGGGGACAACGGGCAAGCCGCAC 960 Query 1927 GCCTGAACAAGGATTTCTTCGCCAACGCCAAGGCACAGAGCTGGTGGTACTTACGCAAGC 1986 | ||||||||||| |||||||| |||||||| || |||||||||||| ||||| || | Sbjct 961 GTCTGAACAAGGACTTCTTCGCTAACGCCAAAGCCCAGAGCTGGTGGCGGTTACGTAAAC 1020 Query 1987 TCTTCCGGAATACCTACCGCGCCGTTGTTGAGGGTATGGCCTACAACCCGGACGAAATTA 2046 | || | |||||||| |||||||| ||||| |||||||| ||||||||||||||||| | Sbjct 1021 TTTTTCAGAATACCTGGCGCGCCGTGGTTGAAGGTATGGCTTACAACCCGGACGAAATCA 1080 Query 2047 TCTCCATCAGCAGCACGATGGAGAGCAAAGACAAACTCATCATCGAGCTTTCGCAGCCAA 2106 |||| |||||||| | |||| |||||| |||||||||||||||||||||||||| | Sbjct 1081 TCTCAATCAGCAGTAGCATGGCACTCAAAGATAAACTCATCATCGAGCTTTCGCAGCCGA 1140 Query 2107 CCTACTCCATTAACGGCGTGGGGAAAATCGTTGTGGATAAACAGCCTGACGGCACCAGGT 2166 |||| |||||||| || ||||| ||||||||| | |||||||||||||| || ||| | | Sbjct 1141 CCTATTCCATTAATGGTGTGGGAAAAATCGTTATTGATAAACAGCCTGATGGAACCCGAT 1200 Query 2167 CGCCGAACCTCGCCGACTCGGTGATGATCAGCTACGCGCCAATGAATTCAGCCCTCAACA 2226 |||| ||||| ||||||||||||||||||| ||| || ||||||||||||||||| |||| Sbjct 1201 CGCCAAACCTTGCCGACTCGGTGATGATCAACTATGCCCCAATGAATTCAGCCCTGAACA 1260 Query 2227 TCTGGGAACTGCTAGGGAGACAGGCCTGATGGCACGAAACAAACAAGCCTCGCGACGAAC 2286 ||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1261 TCTGGGAGCTGCTAGGGAGACAGGCCTGATGGCACGAAACAAACAAGCCCTGCGGCGAAC 1320 Query 2287 GGTACAGGCCACGGCCGACGGCTACGAGAACTTTGTCGCCCGCGTGGGGATGCAGACGCC 2346 | |||||||| || || || || ||||| ||| | |||||||| ||||||||||| || Sbjct 1321 TGCGCAGGCCACAGCTGATGGTTATGAGAATTTTATTGCCCGCGTAGGGATGCAGACACC 1380 Query 2347 TAACCAGCACTCCGCATCGACCTACCGGGCGAACTTCACCAGCCGCAACCGTATGCTGGT 2406 |||||||||||| ||||| ||||||||||| || |||||||| || ||||| |||||||| Sbjct 1381 TAACCAGCACTCAGCATCCACCTACCGGGCTAATTTCACCAGTCGTAACCGCATGCTGGT 1440 Query 2407 GGAATGGTCCTATCGCTCATCCTGGCTCATCGGTGAAGCGGTAGATGCTATCCCCGACGA 2466 ||||||||||||||| || |||||| ||||||| |||||||| ||||||||||| || || Sbjct 1441 GGAATGGTCCTATCGTTCGTCCTGGATCATCGGCGAAGCGGTCGATGCTATCCCAGATGA 1500 Query 2467 CATGACCCGCAAAGGCATTCGCATCACTTCTGAGATTGACGCAAAAGACCGTGGCACTCT 2526 ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||| ||| Sbjct 1501 TATGACCCGCAAAGGCATTCGCATCACTTCGGAAATTGATGCAAAAGATCGTGGCATTCT 1560 Query 2527 CGAAGCGCAGCTGGATCAGTTGCAAATCTGGGATGCGCTGAACGACGTACTGAAATGGTC 2586 |||| | || |||||| ||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1561 CGAATCACAACTGGATGAGTTGCAAATCTGGGATGCGCTGAATGACGTGCTGAAATGGTC 1620 Query 2587 TCGTCTCTACGGCGGCGCGGTGGGCTTCATCATGATAGAAGGTCAGGCGCCCATGACCCC 2646 || |||||||||||||||||||| ||||||||||| || || ||||| || |||||||| Sbjct 1621 GCGCCTCTACGGCGGCGCGGTGGGTTTCATCATGATTGAGGGGCAGGCACCAATGACCCC 1680 Query 2647 GCTACGGCTCGAAACCATTGGTGAAGGCAAGTTTAAGGGGATTCTTCCGCTTGACCGCTG 2706 ||| || | ||||||||| ||| | |||||||||||||||||||| ||||| |||||||| Sbjct 1681 GCTGCGACCCGAAACCATCGGTAAGGGCAAGTTTAAGGGGATTCTCCCGCTCGACCGCTG 1740 Query 2707 GATGATTAACCCGGTACTGACCCGCCGCATTAAAGAAATGGGGCCGAATCTCGGCAAGCC 2766 ||||||| |||||||||||||||||||||||||||| ||||||||| | || || || || Sbjct 1741 GATGATTGACCCGGTACTGACCCGCCGCATTAAAGATATGGGGCCGGACCTGGGTAAACC 1800 Query 2767 TGAGCTTTATGATGTGGTGACCACCGCAACGGGCATCCCCGCCTGGCGTATTCACCATAG 2826 |||| |||| |||||||||||||| |||||||| || || |||||||| ||||| || || Sbjct 1801 TGAGTTTTACGATGTGGTGACCACAGCAACGGGAATTCCTGCCTGGCGCATTCATCACAG 1860 Query 2827 CCGCCTGATTCGCTTCGATGGGGTGACGCTGCCATTCCAGCAGAAGATGACCGAGAACGA 2886 || ||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 1861 TCGACTGATTCGCTTTGATGGCGTCACGCTGCCATTTCAGCAGAAGATGACCGAGAACGA 1920 Query 2887 ATGGGGAATGTCGGTTGTAGAGCGTATCTGGGATCGGCTTACTGCGTTCGACAGCGCCAC 2946 |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct 1921 ATGGGGAATGTCGGTTGTAGAGCGTATCTGGGATCGTCTTACCGCGTTCGACAGCGCTAC 1980 Query 2947 TGTCGGTGCGGCGCAGCTGGTCTACAAAGCGCATCTGCGGACCTACAAAGTGGAAAAACT 3006 |||||| ||||||||||||||||||||||||||| |||| ||||||| ||||| || || Sbjct 1981 TGTCGGCGCGGCGCAGCTGGTCTACAAAGCGCATTTGCGTACCTACAGCGTGGAGAAGCT 2040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130240723699080