Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028759.1 Length=58065 Score E Sequences producing significant alignments: (Bits) Value seq1401 223 1e-53 seq2028 109 2e-19 >seq1401 Length=3734 Score = 223 bits (246), Expect = 1e-53 Identities = 401/578 (69%), Gaps = 16/578 (3%) Strand=Plus/Minus Query 706 GGCATCGTTTCGACGGCCTGGCCGTCGGTGCGTGCGACGTGCAGCGCGATGGGCCTCGGG 765 || ||||| ||||| | |||||| ||||||| | |||| || ||||||| || | Sbjct 1415 GGGATCGTGTCGACCGGCTGGCCCGCGGTGCGGGACCAGTGCCGCAAGATGGGCGTCCGT 1356 Query 766 TTCGACCTGTGGCAGGACGACCTCGG-CAAGCTGATTTGCGCCAAGCGCAGCGACGGCCT 824 |||| ||||||| | |||||| | || ||| |||||||||| | ||| || Sbjct 1355 CACGACGAATGGCAGGCAGGCCTCGGGCGCGC-GATGCTCGCCAAGCGCGCCAGCGGACT 1297 Query 825 GTACGCGGCCGACATGTTCG----CA--ATGTCGATCCCGCGGCAGACCGGCAAGACGTA 878 |||||| |||| ||| || || || |||||| || ||| ||||||||||| Sbjct 1296 GTACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGCCGCCAGGTCGGCAAGACGTT 1237 Query 879 CCTGCTCGGCGCGCTCGTGTTCGCGCTGTGCATCAAGACGCCCAACACAACGGTGATCTG 938 | |||| || || | ||||| || ||||||| || || ||||| ||||| Sbjct 1236 CACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCTTCCCGAAGCTCACGGTCATCTG 1177 Query 939 GACGGCGCACCGGACCCGCACGGCCGCAGAGACTTTCC-GCAGCATGCAGGGCCTCGC-- 995 ||| ||||||| ||||||| || ||||| ||| | || |||||||| |||| Sbjct 1176 GACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGC-TGCAGGGCTTCGCCC 1118 Query 996 -GAAGCGCGACAAGATCGCCGCGCACATCTTGAACGTGCACACCGGCAACGGCAAAGAGG 1054 |||||| ||| | ||| |||| ||| | | | | | | ||||| | || Sbjct 1117 AGAAGCGG---AAGGTGGCCCCGCATATCCGGCAGATCCGCCGAGTGAACGGGCAGCAGC 1061 Query 1055 CCGTGCTGTTTAAGAACGGCTCGCGCATCCTGTTCGGTGCCCGCGAGCGCGGGTTCGGCC 1114 | || ||||||||||| || ||| ||||||||||||||||| ||| ||||||| Sbjct 1060 AGATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCC 1001 Query 1115 GCGGGTTCGCCGGTGTCGACGTCCTGATTTTCGACGAGGCGCAGATCCTCACCGAGAACG 1174 |||| |||||||||||||||||| || | ||| ||||||||||||||| | | || | Sbjct 1000 GCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAGG 941 Query 1175 CAATGGACGACATGGTGCCCGCGACGAACGCGGCGCCTAACCCGCTGATCCTGCTGGCCG 1234 | | || |||||||||||||| || ||||| || |||||||| ||| | ||| | Sbjct 940 CCCTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCATCATCCTGATGG 881 Query 1235 GTACGCCGCCGAAACCGACGGACCCCGGCGAGGTGTTC 1272 | || ||||| || ||||||||||| | |||| Sbjct 880 GCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGTTC 843 >seq2028 Length=10780 Score = 109 bits (120), Expect = 2e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 1081 ATCCTGTTCGGTGCCCGCGAGCGCGGGTTCGGCCGCGGGTTCGCCGGTGTCGACGTCCTG 1140 ||| ||||||| || || ||| |||||||||| || || |||| || |||||| || | Sbjct 6598 ATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGTCGACATCGAG 6539 Query 1141 ATTTTCGACGAGGCGCAGATCCTCACCGAGAACGCAATGGACGACATGGTGCCCGCGACG 1200 | ||||| |||||||||||||| |||||||| || |||| |||||||| | |||||| Sbjct 6538 GTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGTCGCAGCGACG 6479 Query 1201 AAC 1203 ||| Sbjct 6478 AAC 6476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185678307554580