Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028791.1 Length=44492 Score E Sequences producing significant alignments: (Bits) Value seq2028 122 2e-23 >seq2028 Length=10780 Score = 122 bits (134), Expect = 2e-23 Identities = 450/693 (65%), Gaps = 58/693 (8%) Strand=Plus/Minus Query 657 TCCATCCCGCGCCAGGTCGGCAAGACGTACCTGGTCGGCTGCATCGTCTTTGCGCTCGCG 716 || ||||| || ||||| || ||||| | ||| |||||| ||| || | ||||| | | Sbjct 6844 TCAATCCCTCGACAGGTTGGTAAGACATTCCTAGTCGGCATGATCATCATCGCGCT-GTG 6786 Query 717 C-TGCTGAACCCGCGGCTGACCGTGATCTGGACGGCGCACCGCACGAAGACCGC--CGAA 773 | | |||| ||| |||| ||||| | ||||| ||||| ||||||||||| || |||| Sbjct 6785 CATTCTGACGCCGAGGCTCACCGTCTTGTGGACAGCGCATCGCACGAAGACAGCAACGAA 6726 Query 774 GAGACGTTCGACAGCTTCAAGGCGATGTGCGAGAACAACCCGCTGCTGGGCGGCATCGG- 832 || | ||| | | | | ||| ||| | |||| || | | | |||| | | | Sbjct 6725 GA--CCTTCCAGACCATGCAGGGCATGGTCAAGAAGAAGAAGATTCGGGGCCACCTTGCT 6668 Query 833 -CGGGCCGATCATCAA--ACGG-ATCAGCGAGTCGCGCGGCGACAAGGGGATCTATCTGC 888 | ||||| ||| |||| || || | ||||| | | |||| | | Sbjct 6667 CCTGGCCG-----CAATGACGGTATTCGCACAGCCAATGGCGAGCAAGAGATCCGGTTCC 6613 Query 889 GCAACGGCAGCCGGATTCTGTTCGGCGCGCGTGAGCACGGTTTCGGTCTGGGTTTCGCCG 948 ||||||||||| ||| |||||||||| |||||| ||| ||||| | || |||| || Sbjct 6612 GCAACGGCAGCGTGATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACG 6553 Query 949 GCGTCGGTGTCCTGGTGCTCGACGAGGCGCAGCGCGTCACGACGCAGGCCATGGACGACC 1008 |||| || ||| |||| ||||||||| | | || | |||| |||| ||| Sbjct 6552 AGGTCGACATCGAGGTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACA 6493 Query 1009 TGATCCCGACGATGAACACGGTCGCG-----AATC-----CGCTGGTGCTGATGACGGGC 1058 || || | ||| |||| | ||| || | || ||||| || | | | |||| Sbjct 6492 TGGTCGCAGCGACGAAC-CAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGC 6434 Query 1059 ACACCGCCGCGGCCGAACGACGCCGGCGAAGTGTTCGCGATGCACCGGCAGGACGCGCTG 1118 || || |||||| ||| || | ||||| | || | || ||| | || ||||| Sbjct 6433 ACGCCCCCGCGGGCGACTGATCCTGGCGAGGAGTGGCTGGAGCGCCGCAATGATGCGCTT 6374 Query 1119 GAC-----GGCGA--------------GGCC-----GAAGGGACGCTGTACGTCGAGTTC 1154 || | ||| |||| || | || |||||||||||||| Sbjct 6373 GAGATCAAGCCGATGGATCAGGTTGTGGGCCTGTCGGAGGACACAGTGTACGTCGAGTTC 6314 Query 1155 TCCGCGGACGACGGCGCGAGCCCGGACGATCGGGCGCAGC-TGCGCAAGGCGAACCCGTC 1213 || |||||| | | |||| ||||||||| || || | |||| ||||| || || || Sbjct 6313 TCGGCGGACAAGGACGCGGACCCGGACGACATGGAACAACTTGCG-AAGGCCAATCCTTC 6255 Query 1214 GTATCCGCACCGCACCGGCGAACGCG-CGATCCGGCGGATGCGGAAGTCGCTC---ACCG 1269 || ||| ||||||||| || || | || || ||||||||||||| ||| | || Sbjct 6254 GTTTCCACACCGCACC-CCGCTCGAGTCGGTCATGCGGATGCGGAAGAACCTCAAGAACG 6196 Query 1270 AAGAGTCGTTCCTACGCGAAGCGCTGGGGATCT 1302 | || |||||| || || ||| |||| |||| Sbjct 6195 AGGACTCGTTCAAGCGTGAGGCGATGGGCATCT 6163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142246600445160