Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq802 1061 0.0 >seq802 Length=2299 Score = 1061 bits (1176), Expect = 0.0 Identities = 1635/2290 (71%), Gaps = 86/2290 (4%) Strand=Plus/Minus Query 39001 GTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTA 39060 |||||| || || ||||| || ||||| |||||||||||||||||| ||||||||| Sbjct 2292 GTCGCCGACGCTGG-GAGCAGCGCGGCCATATACTCGGCCGGGTAGTGCTCCTTCAGGTA 2234 Query 39061 CGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCC 39120 || || | |||| || || |||||||| || ||||| ||||||||||| ||||| | Sbjct 2233 GGCGGTCCAGTAGCTGACGACGCCGTACGCGGCCGAGTGGGCCTTGTTGAACGCGTAGTC 2174 Query 39121 GGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCGCTGTCCGAGTAGCCTCGCTC 39180 | ||| || | || | |||||| | ||||| ||| || || ||| |||| ||||| Sbjct 2173 CGAGAACGGGAGCAGGATGTCCCAGAGCGCCTTGATCGCCGCCTCGGAGAAGCCGCGCTC 2114 Query 39181 GCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTT--- 39237 | || | |||| | || ||| |||| | || ||||| ||||||||| Sbjct 2113 CTTCATGCCGCCCGAGAAGCCCTCGTACTGCTTGTCGAG---CTCGGACTTCTTCTTCTT 2057 Query 39238 GCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCTGCGC 39297 |||||| || || || || | ||| || ||||| || | |||| || | ||| || Sbjct 2056 GCCCATCGCGCGGCGGAGGATGTCAGCTTGGCCGAGCGAGAAGCCGGCCACCCGCTGAGC 1997 Query 39298 CGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGATCTCCCG 39357 | | ||||||||||| |||||||| || ||||| |||| || ||||| ||| Sbjct 1996 GATCGACATGACCTGCTCCTGATAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCCTT 1937 Query 39358 CAGGGGCTCCTCCACCTCGGGGTGAATCGGCGAGATCGCCTGCTGTCCATTCTTCCGGAG 39417 ||| || ||||| | |||||| || ||||| | ||||| |||| | || ||||| || || Sbjct 1936 CAGCGGTTCCTCGAGCTCGGGATGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGCAG 1877 Query 39418 GGCATAGTTCGTGTGTGAGCCAACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGC 39477 || ||||| ||||| ||| | | ||||| || ||||| ||||||||||||| || || Sbjct 1876 CGCGTAGTTGGTGTGCGAGTCGGCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACCGC 1817 Query 39478 CGAGATGTCCTCGAAGTTGTCGGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCACCGCC 39537 ||||||||||||||||||||||||||||| ||||| |||||| |||||| | ||||| Sbjct 1816 CGAGATGTCCTCGAAGTTGTCGGGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCGCC 1757 Query 39538 GTCGAGCTGGAACACCGAGAGCGTGTCACCCTTGGCCAGCAGCTCGTAGGTCGGGGCGTC 39597 ||||||||||||||| ||||||||| || ||| ||||| ||||||| || ||||| Sbjct 1756 GTCGAGCTGGAACACGCCGAGCGTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCGTC 1697 Query 39598 GTCCAGCGGGATGTTCTCCAGGTCGACGTGCTCCCCACGGTTACGACGGATGTTCTCGAC 39657 ||| ||| | | ||| ||||||| | || || ||||| | ||||||||||||| Sbjct 1696 GTCGAGCTCCAGGCGCTCGAGGTCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCGAG 1637 Query 39658 GGCGTCGCCCATGATCGTGAGGTTCCGCAGGCCGAGGAAGTCCATCTTGACCGCGCCCAT 39717 ||||| |||||||||||||| ||||| || |||||||||||||||| | ||| | Sbjct 1636 CGCGTCCGAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCGAG 1577 Query 39718 GCTCTCGCACTGGGGGTAGTCCCACTGCGTGACGGTGACGCCGTCC-GCAGGACGGACCC 39776 || |||||| |||||||| ||||||||||| | ||||||| || | || | Sbjct 1576 GCCCTCGCAGGTTGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCG-CGTTTCT 1518 Query 39777 ACACCGGAAGGTGATCGACCAGGGGCTCGTTGGACATGATCACACCGGCCGCGTGCACGC 39836 || |||| | |||| ||| || ||| | |||||||| || || || |||||||||| Sbjct 1517 GCAGGGGAATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCCGCGGCGTGCACGC 1458 Query 39837 CCATCTGGCGAACCAGACCTTCGAGCCCGAGCGCAGTGTCGATCACCTCCTTCGAGTCCT 39896 || ||| || ||| || ||||| |||||||| |||||| ||| ||||| ||| Sbjct 1457 CCCACTGCCGCTTCAGGCCCTCGAGGCCGAGCGCCGTGTCGTACACGAGCTTCG---CCT 1401 Query 39897 TGTCGTTCTC---GTACAGGCCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCG 39953 | | ||| | || | |||||| |||| ||||||| | |||||| |||||||| | Sbjct 1400 CGGGATCCTCGGTGAGCACGGCCCGGAACTCGGCCGCCTCCTTGTAGCGAGGGTGCTCGG 1341 Query 39954 GGTTGAAGATCCCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGTACGCCTTGG 40013 | | | ||| ||| || || || | |||| || ||| ||| |||||| | Sbjct 1340 GATCGGTGATGCCCGAGAGCGGGATGTCCTTCGCCATGACGGCGGGCGGCATCGCCTTCG 1281 Query 40014 TCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGCGT 40073 | ||||||||||| | ||| || | |||||||| | ||||||||||| ||| | Sbjct 1280 TGAGCTTCTCGCCCATACCGAACGGGAAGCAGAGCACGCGCGACGCGTCCTTCAGCGCCT 1221 Query 40074 TGCGCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCT 40133 || ||||||| ||| |||| |||| || || || ||| | |||||||||| Sbjct 1220 GCTTCGACTTGATCGTTCCGTAGGTGACGATTTGCGCCACGCGCTCGTCGCCGTACTTCT 1161 Query 40134 CGGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGG 40193 ||||||||||| |||||||||||||||||| || ||||||||||||| ||| | ||||| Sbjct 1160 CGGTGACGTACATGATGACCTCGCCGCGACGGCGATCATCGAAGTCGACGTCGAAGTCGG 1101 Query 40194 GCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGAT 40253 |||| || ||||| |||||||| ||||| |||||||||||||| ||||||| ||| |||| Sbjct 1100 GCATCGAGACGCGATCGGGGTTGAGGAATCGCTCGAAGATGAGTCCGTGCTGCAGCGGAT 1041 Query 40254 CGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAG 40313 |||| |||||||| | | | ||||||||||| || || || ||||||| || || | Sbjct 1040 CGAGATCGGTGATGCGCATGGCGTAGGCGACCATGGATCCCGCGCCCGAGCCACGACCGG 981 Query 40314 GACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGT 40373 | || || | | |||||| ||||| | |||| ||||||||||||||| || ||||||| Sbjct 980 GGCCCACGCGGATGCCGTTGTCCTTCGACCAGTTGATGAAGTCGGCGACCACGAGGAAGT 921 Query 40374 AGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCTTGCCGTGCT 40433 || |||||||||||||| |||| | | |||||||||||| | |||||||| || Sbjct 920 AGCCGGGGAAGCCCATCTGCGTGATGACGCCGATCTCGTACTCGGCCTGCTTGC---GCA 864 Query 40434 CGTAGTCGG---TCCCGTTCGGG-AACCGTCGAGCTGCCCCACGGTGGACCTCGTCCTCG 40489 | |||||| | ||| ||||| | | || | || ||||| | |||||| | | Sbjct 863 CCGAGTCGGGGATGCCGCTCGGGTAGCGGTAGTGCAGCCCC-TTCTCGACCTCCTTGATG 805 Query 40490 AACCAGGTCACCTCCGTGTGCCCCTCGGGCACCGGGAAGCGAGGCATG----AGGTCGGT 40545 |||||| | |||| || | || ||||||||||| |||| |||||| || || Sbjct 804 AACCAGCTGTCCTCGGTCTCGCCATCGGGCACCGGATAGCGCGGCATGTAGTTGGCCGAC 745 Query 40546 GTGCTCGAACATGCCCGTCGTGTCGACACGCTCGGCGATCTCCAGCGTGGTCCGCATCCC 40605 ||| | |||| | | | || | |||||||||||| ||||||| | || | Sbjct 744 GTG-TTGAAC-TCCAC-----GTTGCAACGCTCGGCGATGAGCAGCGTGTT----GTCGC 696 Query 40606 CCACTCCCAGATGGGAGAGGAGTCGATG-GCCGCCATCTCGGCGGCCGTCTTGATGTAGT 40664 | | || | | | ||| |||| |||| ||||||||| || ||||||| ||||| Sbjct 695 ACGCGTCCGGGAAGTCGCGGA--AGATGTGCCG-CATCTCGGCCGCGGTCTTGAGGTAGT 639 Query 40665 ACCCGGAGCCCTCGAACCGGAAGCGGTTCGGGTTGTCGAGCGTGGTGCCGGTCTGGACGC 40724 | || ||||| |||||| |||||||||||||| |||||| || ||| | ||| |||| Sbjct 638 AGCCCGAGCCGTCGAACTTGAAGCGGTTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGC 579 Query 40725 AGAGTAGGGCATCGTGCGCCTTGCTCTCGTCGGC--CGTG-ACGTAGTGGCTGTCGTTGG 40781 |||| || || |||||||| | ||||||| |||| |||||||| |||||| | Sbjct 578 AGAGCAGCGCCGAGTGCGCCTCG---GCGTCGGCCTCGTGCACGTAGTGCAGGTCGTTCG 522 Query 40782 TGACCACCGGGGTGAGCGCGAGGT-GCTTGCCCAGCCGGTAGAGGTCGTCGCGGACGCGC 40840 || | || | | || | ||||| || | | | | | ||||||| |||| || Sbjct 521 TGGCGACGAGCGGGATCTTGAGGTCGCGCG-CGATCTTGATGAGGTCGGACTGGACCCGG 463 Query 40841 CGCTCGATCTCCAGGCCGTGGTCCATGATCTC-CAG--GAAGTACCGGTCACGACCGAAC 40897 |||||||| || || ||||||||||||| ||| ||| ||||| | || | ||||| Sbjct 462 CGCTCGATGTCGAGCCCGTGGTCCATGAGCTCGCAGAAGAAGTTC---TCTCTGCCGAAG 406 Query 40898 ACCTCCAGGTAC-CGGCCAGCCTCCGCAACGGCCTGGTCGTACTGCCCGAGGTTGAGCCG 40956 | ||| || || ||||| ||| || ||||| |||||||||||||||| || || Sbjct 405 ATGTCCTGGAACTCGGCC-GCCGCCTGCCGGGCCTCGTCGTACTGCCCGAGGCGCAGGCG 347 Query 40957 GGTCATGATCGCACCGCCAGGGCAGCCCGTGGTGACGATCAGGCCCTCGTTGT-GCTCGG 41015 |||| |||| | || ||||||||||| ||| ||| || |||| | || | || | Sbjct 346 GGTCTGGATCTCGCCCGAGGGGCAGCCCGTCGTGGTGATGAGCCCCTTGCCGTAGGTCTG 287 Query 41016 CGACGAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCTTGGTA-CG-ACC 41072 | | || ||| |||||| ||||| ||| | || || || | ||| | || | | Sbjct 286 C-AGCAGCTCGCGGTCCATACGCGG---CTTGAAGTAGTAGCCCTGCATGGAAGCGTAGC 231 Query 41073 GAGAGCTGAGCTTCATGAGGTTGTGCAGGC---CGGTCTTGTTCTCGGCGAGGATCGTGA 41129 || ||| | ||||||||||| || ||||| |||| | ||| || || | Sbjct 230 TCGA---CAGCCGGAAGAGGTTGTGCATGCCCTCGGTC---GTCTCCGAGAGCATGGTCA 177 Query 41130 GGTGGGTGTACGCACC-GCGACCGCTCACGTCGTAACGCTTCTGGTCCTCGGTGCCCCAC 41188 ||||||||| || || ||| ||| |||||||| ||| | | || ||||||| Sbjct 176 TGTGGGTGTAGGCGCCGGCGCCCG-ACACGTCGT--CGC----CGCCACCGCTGCCCCAG 124 Query 41189 TGCACCCGCTCCTGATCGAAGC---GCGAGCCCGGAGCCATGTACGCCTCGATGCCGATG 41245 |||| || || ||| || | | ||| || | | ||| ||||||||||||||| Sbjct 123 CGCACGCGGGTCTTGTCGGTGCGGTGGGTGCCGGGGGTGAGGTAGGCCTCGATGCCGATG 64 Query 41246 ATCGGCTTGA 41255 ||||| |||| Sbjct 63 ATCGGGTTGA 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160399409288580