Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028832.1 Length=61511 Score E Sequences producing significant alignments: (Bits) Value seq2028 105 3e-18 seq1401 95.1 5e-15 >seq2028 Length=10780 Score = 105 bits (116), Expect = 3e-18 Identities = 143/199 (72%), Gaps = 9/199 (5%) Strand=Plus/Minus Query 1816 ATCCTGTTCGGCGCCCGTGAAAAAGGCTTCGGTCGCGGCTTCGCGAAGGTCGATGTGCTG 1875 ||| |||||||||| ||||| || ||||| || ||||||| ||||||| | | Sbjct 6598 ATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGTCGACATCGAG 6539 Query 1876 ATTTTCGATGAGGCTCAGATCCTCACCGAGAACGCGATGGACGACATGGTGCCGGCGACG 1935 | ||||||||||| |||||||| |||||||| ||| |||| |||||||| | |||||| Sbjct 6538 GTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGTCGCAGCGACG 6479 Query 1936 AACGCGTCAC--CAAA-------CGCGCTGATCCTGTTGGCTGGCACGCCGCCGAAGCCA 1986 ||| ||| | |||| ||||||| | | || |||||||| ||| | | Sbjct 6478 AACCAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGCACGCCCCCGCGGGCG 6419 Query 1987 ACAGATCCGGGTGAGGTGT 2005 || ||||| || |||| || Sbjct 6418 ACTGATCCTGGCGAGGAGT 6400 >seq1401 Length=3734 Score = 95.1 bits (104), Expect = 5e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 1798 TTCACCAATGGTTCGCGAATCCTGTTCGGCGCCCGTGAAAAAGGCTTCGGTCGCGGCTTC 1857 |||| || || || || ||| ||||||| ||||| || |||||||| ||||||||| Sbjct 1052 TTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCGCGGCTTC 993 Query 1858 GCGAAGGTCGATGTGCTGATTTTCGATGAGGCTCAGATCCTCACCGAGAACGCGATGGAC 1917 || ||||| || || | ||||||||| ||||||||| | | || || | || Sbjct 992 GCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAGGCCCTTGAG 933 Query 1918 GACATGGTGCCGGCGACGAACGCGTCACCAAACGCGCTGATCCTGTTGGCTGGCACGCCG 1977 ||||||||||| || || ||||| || ||| |||| ||| | || ||||| ||| Sbjct 932 GACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCATCATCCTGATGGGCACCCCG 873 Query 1978 CC 1979 || Sbjct 872 CC 871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 196705026975420