Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028846.1 Length=61081 Score E Sequences producing significant alignments: (Bits) Value seq1401 143 1e-29 seq2028 114 5e-21 >seq1401 Length=3734 Score = 143 bits (158), Expect = 1e-29 Identities = 340/505 (67%), Gaps = 18/505 (4%) Strand=Plus/Minus Query 1649 CGCCAAGCGTCCCGACGGCCTGTACGCGGCCGACATGTTCGGCATG------TCGATACC 1702 ||||||||| || ||| |||||||| |||| ||| |||||| ||||| Sbjct 1317 CGCCAAGCGCGCCAGCGGACTGTACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTG 1258 Query 1703 GCGGCAGACCGGCAAGACGTATTTCCTTGGCGCCCTGGTGTTTGCGCTGTGCAAGATGAA 1762 || ||| ||||||||||| | | || | | | || || || |||| || Sbjct 1257 CCGCCAGGTCGGCAAGACGTTCACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCTT 1198 Query 1763 CCCCG-GCACAACGGTGATCTGGACGGCGCACCGTACCCGCACGGCGGGTGAGACGTTCC 1821 ||| || || |||| |||||||| ||||||| ||||||| | ||||||||| Sbjct 1197 CCCGAAGCTCA-CGGTCATCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCG 1139 Query 1822 -GCAGCATGCAGGGCCTCGCC---AAGCGTGAGGAGATCGCCCCGCACATCTTGAACGTG 1877 | || |||||||| ||||| ||||| ||| | |||||||| ||| | | | Sbjct 1138 AGTCGC-TGCAGGGCTTCGCCCAGAAGCGGAAGGTG---GCCCCGCATATCCGGCAGATC 1083 Query 1878 CACACGGGCAACGGCAAAGAGGCCGTGTACTTCACGAACGGGTCACGCATCCTGTTCGGC 1937 | | | ||||| | || | ||||| |||||| || || ||| ||||||| Sbjct 1082 CGCCGAGTGAACGGGCAGCAGCAGATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGT 1023 Query 1938 GCCCGTGAGAAGGGTTTCGGCCGTGGTTTCGCCAAGGTCGACGTGCTGATTTTCGATGAG 1997 ||||| ||| || |||||||| || |||||| |||||||| || | ||||||| Sbjct 1022 GCCCGCGAGTCCGGCTTCGGCCGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAG 963 Query 1998 GCGCAGATCCTCACCGAGAACGCTATGGACGACATGGTTCCGGCGACCAACGCCTCGCCT 2057 |||||||||||| | | || || | || |||||||| || || |||||||||||| Sbjct 962 GCGCAGATCCTCGGCAACAAGGCCCTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAG 903 Query 2058 AACGCGCTGATCCTGCTCGCTGGTACGCCGCCGAAGCCGAACGATCCCGGCGAGGTGTTC 2117 ||| |||| ||| | || || || ||||| || ||| |||||||| | |||| Sbjct 902 AACCCGCTCATCATCCTGATGGGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGTTC 843 Query 2118 ACGAACCTG-CGCATGGACGCGATC 2141 || ||| | || | || |||||| Sbjct 842 -CGCACCCGCCGAAACGAAGCGATC 819 >seq2028 Length=10780 Score = 114 bits (126), Expect = 5e-21 Identities = 145/199 (73%), Gaps = 9/199 (5%) Strand=Plus/Minus Query 1926 ATCCTGTTCGGCGCCCGTGAGAAGGGTTTCGGCCGTGGTTTCGCCAAGGTCGACGTGCTG 1985 ||| |||||||||| |||||| || ||||| ||||| |||| | |||||||| | | Sbjct 6598 ATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGTCGACATCGAG 6539 Query 1986 ATTTTCGATGAGGCGCAGATCCTCACCGAGAACGCTATGGACGACATGGTTCCGGCGACC 2045 | |||||||||||||||||||| |||||||| || |||| |||||||| | ||||| Sbjct 6538 GTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGTCGCAGCGACG 6479 Query 2046 AAC--GCCTCGCCTAA-------CGCGCTGATCCTGCTCGCTGGTACGCCGCCGAAGCCG 2096 ||| | |||| | || ||||||| | | || || ||||| ||| | || Sbjct 6478 AACCAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGCACGCCCCCGCGGGCG 6419 Query 2097 AACGATCCCGGCGAGGTGT 2115 | ||||| ||||||| || Sbjct 6418 ACTGATCCTGGCGAGGAGT 6400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195329086943220