Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028861.1 Length=44576 Score E Sequences producing significant alignments: (Bits) Value seq1401 129 2e-25 seq2028 120 9e-23 >seq1401 Length=3734 Score = 129 bits (142), Expect = 2e-25 Identities = 445/685 (65%), Gaps = 53/685 (8%) Strand=Plus/Minus Query 647 CGGCAGGTCGGCAAGACGTACCTGATCGGCTGCATCGTGTTCGCGCTCGCGCTGCTGACC 706 || |||||||||||||||| | ||||| | ||| | ||||| ||| | | | Sbjct 1256 CGCCAGGTCGGCAAGACGTTCACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCTTC 1197 Query 707 CCGCGGCTGACTGTGATCTGGACCGCGCACCGCACGAAGACCGCCGAAGAGACGTTCGAC 766 ||| ||| || || |||||||||||||||| | | ||| || | ||||||||||| Sbjct 1196 CCGAAGCTCACGGTCATCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAG 1137 Query 767 A-GCTTCAAGGCGATGTGCGAGAACAACCCGCTGGTGAAGCCACTCGTTCGGCGGATCAG 825 ||| || ||| | || | || | | |||| || | | |||| |||| | Sbjct 1136 TCGCTGCAGGGC----TTCGCCCAGAAGCGGAAGGTGGCCCCGCATATCCGGCAGATCCG 1081 Query 826 C-GAGT---CGCGCGGCGATAAAGGCGTCTACCTGTGGAACGGCTCGCGCATCCTGTTCG 881 | |||| || || || | | || | | ||||||||| || ||| |||||| Sbjct 1080 CCGAGTGAACGGGCAGCAGCAGA----TCACCTTCAAGAACGGCTCCCGGATCATGTTCG 1025 Query 882 GCGCGCGGGAACATGGGTTCGGGCTGGGATTCGCCGGCGTTGGCGTCCTGGTGCTCGACG 941 | || || || || ||||| | || |||||||| || | |||| ||||| ||| | Sbjct 1024 GTGCCCGCGAGTCCGGCTTCGGCCGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATG 965 Query 942 AGGCGCAGCGCGTCACGAATCAGGCCATGGACGACCTGATTCCGACGATGAACACCGTCG 1001 |||||||| | || || ||||| | || ||| || | || | | ||| || ||| Sbjct 964 AGGCGCAGATCCTCGGCAACAAGGCCCTTGAGGACATGGTGCCCGCCACCAACGCC-TCG 906 Query 1002 C-GAACCCGCTGATCCTGATGACGGGCACCCCGCCGCGGCCGACGGACAGCGGCGAAGTG 1060 ||||||||| ||| | ||| |||||||||||| || || ||| |||||||| | Sbjct 905 AAGAACCCGCTCATCATCCTGATGGGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCG 846 Query 1061 TTC------------------GCGAT---GCTGCGGCAGGACGCGCTGGACGGCGAGG-- 1097 ||| ||||| ||| | || ||| | ||||||| Sbjct 845 TTCCGCACCCGCCGAAACGAAGCGATCGAGCTCAAGAAGCTCGCCGCCGCGGGCGAGGAC 786 Query 1098 -CCGAA---GGCACGCTGTACGTCGAGTTCTCCGCGGACGAGGGCGCCGACCCCGACGAC 1153 ||||| | || ||| |||||||| || ||| ||| | |||||||| |||||| Sbjct 785 ACCGAATCGGACATGCTCTACGTCGAACTCGGCGCAGACCCCGACGCCGACCTGGACGAC 726 Query 1154 CGGGCCCAACTGCGGAAGGCGAACCCGTCGTATCCGCACCGCACC---GGCGAACGCGCG 1210 ||| || | ||||| ||||| || || |||||||||||| ||||| ||| Sbjct 725 TGGGATCAGGTCGCCAAGGCCAACCCCTCCTACCCGCACCGCACCCCACGCGAA---GCG 669 Query 1211 ATCCGGCGTATGCGGAAGAACCTCAC---CGAAGAGTCGTTCCTGCGCGAGGCGCTGGGG 1267 |||| || | || ||||||||| | ||| || || | || || || | || || Sbjct 668 ATCCTCCGCAACCGCAAGAACCTCGCCGACGACGACTCCTACCGCCGAGAAGGCCTCGGC 609 Query 1268 ATCTGGGAC-AAGTCCGCG-CACCG 1290 ||||||||| | | ||||| ||||| Sbjct 608 ATCTGGGACGACGACCGCGACACCG 584 >seq2028 Length=10780 Score = 120 bits (132), Expect = 9e-23 Identities = 128/166 (77%), Gaps = 5/166 (3%) Strand=Plus/Minus Query 1110 TGTACGTCGAGTTCTCCGCGGACGAGGGCGCCGACCCCGACGACCGGGCCCAACTGCGGA 1169 |||||||||||||||| |||||| ||| ||| ||||| |||||| || ||||| || Sbjct 6327 TGTACGTCGAGTTCTCGGCGGACAAGGACGCGGACCCGGACGACATGGAACAACTTGCGA 6268 Query 1170 AGGCGAACCCGTCGTATCCGCACCGCACCGGCGAACGCG-CGATCCGGCGTATGCGGAAG 1228 |||| || || |||| ||| ||||||||| || || | || || ||| ||||||||| Sbjct 6267 AGGCCAATCCTTCGTTTCCACACCGCACC-CCGCTCGAGTCGGTCATGCGGATGCGGAAG 6209 Query 1229 AACCTC---ACCGAAGAGTCGTTCCTGCGCGAGGCGCTGGGGATCT 1271 |||||| | ||| || |||||| ||| |||||| |||| |||| Sbjct 6208 AACCTCAAGAACGAGGACTCGTTCAAGCGTGAGGCGATGGGCATCT 6163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142515388730520