Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq802 1068 0.0 >seq802 Length=2299 Score = 1068 bits (1184), Expect = 0.0 Identities = 1631/2286 (71%), Gaps = 78/2286 (3%) Strand=Plus/Minus Query 37908 GTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTA 37967 |||||| || || ||||| || ||||| |||||||||||||||||| ||||||||| Sbjct 2292 GTCGCCGACGCTGG-GAGCAGCGCGGCCATATACTCGGCCGGGTAGTGCTCCTTCAGGTA 2234 Query 37968 CGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCC 38027 || || | |||| || || |||||||| || ||||| ||||||||||| ||||| | Sbjct 2233 GGCGGTCCAGTAGCTGACGACGCCGTACGCGGCCGAGTGGGCCTTGTTGAACGCGTAGTC 2174 Query 38028 GGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCCTCCGAGTAGCCTCGCTC 38087 | ||| || | || | |||||| | |||| ||| || ||||| ||| |||| ||||| Sbjct 2173 CGAGAACGGGAGCAGGATGTCCCAGAGCGCCTTGATCGCCGCCTCGGAGAAGCCGCGCTC 2114 Query 38088 GCTC--GCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTT- 38144 || ||| || | |||| | || ||| |||| | ||| |||| ||||||||| Sbjct 2113 CTTCATGCCGCC--CGAGAAGCCCTCGTACTGCTTGTCGAGC---TCGGACTTCTTCTTC 2059 Query 38145 --GCCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGC 38202 |||||| ||||| ||||||| ||| || || ||||| | | | ||||||| ||| Sbjct 2058 TTGCCCATCGCGCGGCGGAGGATGTCAGCTTGGCCGAGCGAGAAGCCGGCCACCCGCTGA 1999 Query 38203 GCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCG 38262 || | | ||||||||||| |||||||| || ||| |||||| || ||||| || Sbjct 1998 GCGATCGACATGACCTGCTCCTGATAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCC 1939 Query 38263 GCCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGACCGTTCTTGCGG 38322 |||||| ||||| | |||||| |||||||| |||||| |||| ||||||||||||| Sbjct 1938 TTCAGCGGTTCCTCGAGCTCGGGATGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGC 1879 Query 38323 AGGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCGACGACG 38382 || |||||||| ||||||||| | ||||| || ||||| ||||||||||||| || Sbjct 1878 AGCGCGTAGTTGGTGTGCGAGTCGGCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACC 1819 Query 38383 GCCGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGAAGCAGGGAGCGCATCGCGCCG 38442 ||||||||||||||||| | ||| ||||||| ||||| |||||| |||||| | |||| Sbjct 1818 GCCGAGATGTCCTCGAAGTTGTCGGGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCG 1759 Query 38443 CCGTCGAGCTGGAAGACCGAGAGGGTGTCGCCCCTGGCCAGCAGCTCGTAGGTTGCCGGG 38502 |||||||||||||| || ||| |||||||| | ||| ||||| ||||||| | || | Sbjct 1758 CCGTCGAGCTGGAACACGCCGAGCGTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCG 1699 Query 38503 TCGTCCAGCGGGATGTTCTCGATGTCGACGTGCTCACCACGGTTGCGGCGGATGTTCTCG 38562 ||||| ||| | | ||||| ||||| | || || |||||| |||||||||||||| Sbjct 1698 TCGTCGAGCTCCAGGCGCTCGAGGTCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCG 1639 Query 38563 ACCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCC 38622 | |||||| |||||||||||||| || ||||| |||||||||||||| | |||||| Sbjct 1638 AGCGCGTCCGAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCG 1579 Query 38623 AGGGCCTCGCAGCTCGGGTAGTCGAACTGCGTGATCGTCACGCCGTCC-GCAGGCCGCAC 38681 ||| |||||||| | ||||||||||||||||||| || ||||||| || | || Sbjct 1578 AGGCCCTCGCAGGTTGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCG-CGTTT 1520 Query 38682 CCACGTAGGGATGTGGTCGACCAGCGGCTCGTCAGACATGATCACACCGGCTGCGTGCAC 38741 | | || ||| ||||| |||||| ||| |||||||| || || || |||||||| Sbjct 1519 CTGCAGGGGAATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCCGCGGCGTGCAC 1460 Query 38742 GCCCATCTGCCGGACGAGTCCTTCGAGGCCACGCGCGAGGTCGATGACCTCCTTCGCGTC 38801 |||| |||||| || || |||||||| |||| |||| || ||||| | Sbjct 1459 GCCCCACTGCCGCTTCAGGCCCTCGAGGCCGAGCGCCGTGTCGTACACGAGCTTCG---C 1403 Query 38802 CTTGTCGTTCTCGTACAGC---GCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTC 38858 || | | |||| ||| ||||||| |||| ||||||| | |||||| |||||||| Sbjct 1402 CTCGGGATCCTCGGTGAGCACGGCCCGGAACTCGGCCGCCTCCTTGTAGCGAGGGTGCTC 1343 Query 38859 CGGGTTGGTGATGCCCTCCAGGGGCATCGACGCGCCCATCACGTCGGCCGGGTACGCCTT 38918 || | |||||||||| || || || | |||| ||| ||| ||| |||||| Sbjct 1342 GGGATCGGTGATGCCCGAGAGCGGGATGTCCTTCGCCATGACGGCGGGCGGCATCGCCTT 1283 Query 38919 GGTCAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGC 38978 || ||||||||||| | ||| || | |||||||| | ||||||||||| ||| Sbjct 1282 CGTGAGCTTCTCGCCCATACCGAACGGGAAGCAGAGCACGCGCGACGCGTCCTTCAGCGC 1223 Query 38979 GTTGCGCGCCTTGATCCGTCCGTACGTCGCGATCTGTGCGAC---CTTGTCACTGCCGTA 39035 | || ||||||| |||||| || |||| || || || || ||| |||||| Sbjct 1222 CTGCTTCGACTTGATCGTTCCGTAGGTGACGATTTGCGCCACGCGCTCGTC---GCCGTA 1166 Query 39036 CTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCAC 39095 |||||||||||||||| ||| || ||||| || || || ||||||||||||| ||| | Sbjct 1165 CTTCTCGGTGACGTACATGATGACCTCGCCGCGACGGCGATCATCGAAGTCGACGTCGAA 1106 Query 39096 GTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGAT 39155 ||||||||| ||||| || || ||||| ||||| |||||||||||||| ||||| | | Sbjct 1105 GTCGGGCATCGAGACGCGATCGGGGTTGAGGAATCGCTCGAAGATGAGTCCGTGCTGCAG 1046 Query 39156 GGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCG 39215 || || || |||||||| | | |||||| ||| ||| || || || | ||||| || Sbjct 1045 CGGATCGAGATCGGTGATGCGCATGGCGTAGGCGACCATGGATCCCGCGCCCGAGCCACG 986 Query 39216 CCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAG 39275 || ||||| || | | |||||| ||||||| |||| ||||||||||||||| ||||| Sbjct 985 ACCGGGGCCCACGCGGATGCCGTTGTCCTTCGACCAGTTGATGAAGTCGGCGACCACGAG 926 Query 39276 GAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACTCGACCTGCGTGCG 39335 |||||| ||||| |||||||| |||| | | |||||||||||||| ||||| |||| Sbjct 925 GAAGTAGCCGGGGAAGCCCATCTGCGTGATGACGCCGATCTCGTACTCGGCCTGCTTGCG 866 Query 39336 GTGCTCGTCGTCGTACCCACCGGGGAAGCGGCGGTCCATGCCGATGAGCACCTGCTCGCG 39395 | |||| | || | ||| ||||| || || || | |||| || | Sbjct 865 CACCGAGTCGGGGATGCCGCTCGGGTAGCGGTAGTGCAGCCCCTTCTCGACCTCCTTGAT 806 Query 39396 GAAGAACTGGCCCTCCGTCTGGCCCTCGGGCACCGGGAAGCGGGGCATGAGGTTCTGGAA 39455 ||| | | |||| |||| ||| ||||||||||| |||| |||||| ||| | Sbjct 805 GAACCAGCTGTCCTCGGTCTCGCCATCGGGCACCGGATAGCGCGGCATGTAGTTGGCCGA 746 Query 39456 C---TCGAACATGCCGGTCGTGTCGACCCGGTCGGCGATCTCCAGCGTGGTCCGCATCCC 39512 | | |||| | | ||| | | || |||||||| ||||||| | || | Sbjct 745 CGTGTTGAAC-TCC---ACGTTGCAA--CGCTCGGCGATGAGCAGCGTGTT----GTCGC 696 Query 39513 CCACTCCCAGATGGGAGAGGAGTCGATG-GCTGCCATCTCGGCGGCCGACTTCAGGTAGT 39571 | | || | | | ||| |||| || | ||||||||| || | ||| ||||||| Sbjct 695 ACGCGTCCGGGAAGTCGCGGA--AGATGTGCCG-CATCTCGGCCGCGGTCTTGAGGTAGT 639 Query 39572 ACCCCTCGCCCTCGAACCGGAACCGATCCTCCTGGTAGAGGGTCGAGCCGGTCTGGACGC 39631 | ||| ||| |||||| ||| || | | | || |||| ||||| | ||| |||| Sbjct 638 AGCCCGAGCCGTCGAACTTGAAGCGGTTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGC 579 Query 39632 ACAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTGTAGTGCGAGTCGTTGGTGA 39691 | ||||| || ||| ||| | || || | | || ||||||| |||||| ||| Sbjct 578 AGAGCAGCGCCGAGTGCGCCTCGGCGTCGGCCTCGTGCACGTAGTGCAGGTCGTTCGTGG 519 Query 39692 CCACCGGGGTGAGACCGAGG-CGCTGACCGAGGCGGTAGAGGTCGTCGCGGACGCGCCGC 39750 | || | | || |||| ||| | ||| | ||||||| |||| || ||| Sbjct 518 CGACGAGCGGGATCTTGAGGTCGC-GCGCGATCTTGATGAGGTCGGACTGGACCCGGCGC 460 Query 39751 TCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCCCGAAGATCTCC 39810 ||||| || || ||||||||||||| ||| ||||||||| || | |||||||| ||| Sbjct 459 TCGATGTCGAGCCCGTGGTCCATGAGCTCGCAGAAGAAGTTCTCTCTGCCGAAGATGTCC 400 Query 39811 CGCCACTTCGCGGCCTC--GGCGACGGCCTCCTCGTACTGGCCGAGGTTGAGCCGGGTCA 39868 | ||| || ||| | | || |||||| |||||||| |||||| || |||||| Sbjct 399 TGGAACTCGGCCGCCGCCTGCCG--GGCCTCGTCGTACTGCCCGAGGCGCAGGCGGGTCT 342 Query 39869 TCACTGCGCCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGT-GCTCCGCCACC 39927 | |||| |||||| ||||| ||| ||| || |||| ||| | || | || | Sbjct 341 GGATCTCGCCCGAGGGGCAGCCCGTCGTGGTGATGAGCCCCTTGCCGTAGGTCTG-CAGC 283 Query 39928 AGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCGCTGTACGAGCG-AG-AG 39984 |||||| |||||| ||||| ||| | || | ||||| || | |||| || Sbjct 282 AGCTCGCGGTCCATACGCGG---CTTGAAGTAGTA-GCCCTGCATGGA--AGCGTAGCTC 229 Query 39985 GAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTCGT---GGCGAGCATGGTCATGTGG 40041 || ||| ||| |||||||||| ||| || | |||| | |||||||||||||||| Sbjct 228 GACAGCCGGAAGAGGTTGTGCATGCC---CTCGGTCGTCTCCGAGAGCATGGTCATGTGG 172 Query 40042 GTGTAGGCACC-CCGACCGCTCACGTCGT-ACCGCTTCTGCTCGGGCGTGCCCCACTGGA 40099 |||||||| || || ||| |||||||| |||| | || ||||||| | | Sbjct 171 GTGTAGGCGCCGGCGCCCG-ACACGTCGTCGCCGCCACCGC-------TGCCCCAGCGCA 120 Query 40100 CCCGCTCCTGGTCGGAACGGTG---CCCCGGTGCGACGTACGCCTCGATCCCGATGATGG 40156 | || || ||||| ||||| || || | || ||| |||||||| |||||||| | Sbjct 119 CGCGGGTCTTGTCGGTGCGGTGGGTGCCGGGGGTGAGGTAGGCCTCGATGCCGATGATCG 60 Query 40157 GCTTGA 40162 | |||| Sbjct 59 GGTTGA 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159708239411940