Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq210 300 3e-77 seq1052 89.7 1e-13 >seq210 Length=3885 Score = 300 bits (332), Expect = 3e-77 Identities = 325/431 (75%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 10042 ATCAACGTAATCCTGCGTCGCCATCACCGTTGTGGTGTCAATGGTCAGCTCCACTGAGGC 10101 ||| |||||||||||||||||||||||||| ||| ||||| ||||||| || || || Sbjct 3455 ATCGACGTAATCCTGCGTCGCCATCACCGTGCTGGCATCAATACTCAGCTCAACAGACGC 3514 Query 10102 CACACTGCTGACGATGATGACCATGCGGCAGGTCTGCGAACGCCCTGAGCCTTCGGCAAG 10161 ||| | ||||| || || ||||||||||||||||||| |||||| |||||||| || || Sbjct 3515 CACGTTACTGACAATAATAACCATGCGGCAGGTCTGCGCACGCCCGGAGCCTTCAGCCAG 3574 Query 10162 GGTAGGTTTATAACTTTCGGCCATGTTCGCCACGGCAATTAACGTTCCCGCATCATCGTA 10221 ||| ||||| ||||| ||||||| || || ||||| | ||||| ||||| || || Sbjct 3575 TTCAGGCTTATAGCTTTCTACCATGTTAGCGACCGCAATCAGTGTTCCGGCATCGTCATA 3634 Query 10222 CAGGCCAAGCTCTCGCATCCAGAAACCGCCCACCTCCGGCGGAATAACCAGCTCTGCGAT 10281 ||| ||||| || ||||||||||| |||||||| || ||||| | |||||| || || | Sbjct 3635 CAGACCAAGTTCACGCATCCAGAAGCCGCCCACTTCTGGCGGTACAACCAGTTCAGCCAC 3694 Query 10282 AATATAATTACTGTTTCGTTTGTCCTGGCTGATTTTGTTCAGCGCATGTCGCCAGACTTC 10341 ||||| || | || || ||| ||||| ||| ||||| || || |||||||| || Sbjct 3695 GATATAGTTTTTATTCTTGTTATCCACGCTGACTTTATTCAGGGCGTGACGCCAGACCTC 3754 Query 10342 GTGGATAAGCCCGGTCTGTCCGGCATCCGGGACAGGCAATTTACCACCGCCATCCCCGAC 10401 || | || ||||| || |||||||| || |||||||| ||| || || || || Sbjct 3755 ATGCACCAGTTTCGTCTGACCAGCATCCGGCACCGGCAATTTGCCATTACCGTCACCCAC 3814 Query 10402 GGCCATCGTGGTAATGTTGACCTTCCGCCCTCCCGGCGCGGTTGCCGCTGCCAGCTTTGC 10461 |||||| | | | | | || || ||| || || | || || |||||||||||||| Sbjct 3815 GGCCATTGCAGACAGGGTTACTTTTTTCCCGCCGGGGACAGTGGCGGCTGCCAGCTTTGC 3874 Query 10462 TGCACCGGCAG 10472 || ||||||| Sbjct 3875 GGCTCCGGCAG 3885 >seq1052 Length=3581 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 24422 CAGTGCTTTCCCCGCCTCGCCCGCCCGCTTCATGGGGCGGTTTTAATGCAGT 24473 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 3581 CAGTGCTTTCCCCGCCTCGCCCGCCCGCTTCATGGGGCGGTTTTAATGCGGT 3530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104433848443980