Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028922.1 Length=45161 Score E Sequences producing significant alignments: (Bits) Value seq2028 150 5e-32 seq1401 109 2e-19 >seq2028 Length=10780 Score = 150 bits (166), Expect = 5e-32 Identities = 371/550 (67%), Gaps = 16/550 (3%) Strand=Plus/Minus Query 3171 GACGTCTACAGCTTCCCGCAGATGATCCTGCTCGGCGCCGACGCGTCGAACTTCAAGAAC 3230 ||||| | || |||||||| | |||||||| ||||| ||| | | ||||||||| Sbjct 4795 GACGTGTTCACGATCCCGCAGCTCATCCTGCTGGGCGCTAACGAAGCAATGTTCAAGAAC 4736 Query 3231 AAGGACGGGTCGATCAAACCGGCCTGGCAGGTGGCGCTGGCGCGCGTGTTCGCGCTGCCC 3290 ||||||||| ||| || | |||||| | || || | ||| | | | || | ||| Sbjct 4735 GCAGACGGGTCGTACAAGGCGTCTTGGCAGATCGCTCTCGGGCGTGCGCTGGCTATCCCC 4676 Query 3291 GACGACAAGGAAGAACCCGACGCGGCGCGG--GCCCGCGCGGACGTGAAGCAGTTCCCCG 3348 |||||| | || | || | | || ||| | ||||||||||||||||| || | | Sbjct 4675 GACGACGACGATGCTCCTGCTG--GCTCGGATGGGCGCGCGGACGTGAAGCACATCGCTG 4618 Query 3349 CGGCGTCGCCGGAACCGCACATCAAGTTCCTGGAACAGATCGCGATGCTGTTCAGCG-GC 3407 || |||||||| ||||||| || | || | | | |||| ||| ||| || Sbjct 4617 CGCAGTCGCCGGCACCGCACCTCGCGGCGCTCAACGCGTTGGCGAAGCTCGAG-GCGCGC 4559 Query 3408 GAG-ACGTCCATTCCGAT-CGAATCGCTGGGGTTCTCGAACCGGGCGAACCCGACGTCGG 3465 ||| ||| || ||||| || || | | | | || || ||||||||||| || Sbjct 4558 GAGTACGACCTGCCCGATTCGGATTTC--GCGATGACGGACTTCGCGAACCCGACTGGGG 4501 Query 3466 CGGACGCGTATATCGCGTCGCGCGAAGACCTGATCGCCGAAGCTGAGGGCGCGACGGACG 3525 |||| |||| | ||||| || || || |||||||||| || ||||||||||| || | Sbjct 4500 CGGATTCGTACACGGCGTCTCGGGAGAACTTGATCGCCGAGGCGGAGGGCGCGACCGATG 4441 Query 3526 ACTGGGCGCCGGCG--CTGCGGCGCAGCTTCCAGCGCGGTCTGGCGATCCAGAACGGGCT 3583 ||||| | | || | || ||| | | ||| | |||||| ||||||||| ||| Sbjct 4440 ACTGGTCTGTGCCGATCCGCAACGCGG--TGGTGCGTGCTCTGGCAATCCAGAAC-GGCG 4384 Query 3584 GGACAGCATTCCCGACGAGTACCGCAGC-ATCGACGCGAAGTTCCGGTCCCCGCTGTACC 3642 ||| | | |||| | | || | |||||| |||||| || || ||| |||| | Sbjct 4383 TGACGGAAGTCCCCGCTGATTGGGCGTCGATCGACACGAAGTGGCGTTCTCCGATGTATC 4324 Query 3643 TGTCGAAGGCGGCGCAGGCGGACGCCGGCTCGAAGACACTCGCGTCGCTGCCGGACTGGG 3702 |||||||||| || || || || ||| ||||| || |||| || |||||| Sbjct 4323 TGTCGAAGGCCGCCGTCGCAGATGCGGGCGCGAAGCAGGTCTCGTCTGGTCCTGACTGGT 4264 Query 3703 TGAAGGAAAC 3712 ||||||| || Sbjct 4263 TGAAGGACAC 4254 Score = 141 bits (156), Expect = 3e-29 Identities = 453/692 (65%), Gaps = 62/692 (9%) Strand=Plus/Minus Query 1123 ATTCCGCGGCAGGTCGGGAAGACGTACCTGGTCGGCTGCATCGTGTTCGCGCTCGCGC-T 1181 || || || ||||| || ||||| | ||| |||||| ||| | ||||||| | || | Sbjct 6841 ATCCCTCGACAGGTTGGTAAGACATTCCTAGTCGGCATGATCATCATCGCGCT-GTGCAT 6783 Query 1182 GCTGAATCCGCGGCTGACCGTGATCTGGACGGCGCACCGCACGAAGACGGC--CGAAGAG 1239 |||| ||| |||| ||||| | ||||| ||||| ||||||||||| || |||||| Sbjct 6782 TCTGACGCCGAGGCTCACCGTCTTGTGGACAGCGCATCGCACGAAGACAGCAACGAAGA- 6724 Query 1240 ACGTTCGACAGCTTCAAGGCCATGTGCGAGAACAACCCGCTGCTGGGCGGCGTTGG--CG 1297 | ||| | | | | ||| |||| | |||| || | | | |||| | ||| | Sbjct 6723 -CCTTCCAGACCATGCAGGGCATGGTCAAGAAGAAGAAGATTCGGGGCCACCTTGCTCCT 6665 Query 1298 GGCCGATCATCAAGCGAATC----AGCGAGTCGCGCGGCGACAAAGGTATCTATCTGCGC 1353 ||||| || | | | || ||| | | ||||| ||| ||| | ||| Sbjct 6664 GGCCGCA-ATGACGGTATTCGCACAGCCAAT-----GGCGAGCAAGAGATCCGGTTCCGC 6611 Query 1354 AACGGCTCGCGC-ATCCTGTTCGGCGCGCGGGAACACGGGTTCGGTCTGGGGTTCGCCGG 1412 |||||| ||| ||| |||||||||| || || ||||||||| | || |||| || Sbjct 6610 AACGGCA-GCGTGATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGA 6552 Query 1413 CGTCGGCGTCCTGGTGCTCGACGAGGCGCAGCGCGTCACCGAACAGGCGATGGACGACCT 1472 |||| | || ||| |||| ||||||||| | | ||||| ||||| |||| ||| | Sbjct 6551 GGTCGACATCGAGGTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACAT 6492 Query 1473 CATTCCGACGATGAACACGGTCGCG----AA------CCCGCTGATCCTGATGACGGGCA 1522 | | ||| |||| | ||| || || | ||||| | | | | ||||| Sbjct 6491 GGTCGCAGCGACGAAC-CAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGCA 6433 Query 1523 CCCCGCCGCGGCCGACGGATCACGGCGAAGTGTTCGCGCGGCACCGGCAGGAAGCACTGG 1582 | || |||||| |||| |||| ||||| | || | || ||| | || || || | Sbjct 6432 CGCCCCCGCGGGCGACTGATCCTGGCGAGGAGTGGCTGGAGCGCCGCAATGATGCGCTTG 6373 Query 1583 ACGGCGAGGCCGAAGGGTC---------GC----------------TGTACGTCGAGTTC 1617 | | || |||| || || || |||||||||||||| Sbjct 6372 AGATCAAG-CCGATGGATCAGGTTGTGGGCCTGTCGGAGGACACAGTGTACGTCGAGTTC 6314 Query 1618 TCCGCGGACGACGGCGCCGACCCCGACGACCGGGCGCAACTGCGGAAGGCGAACCCGTCG 1677 || |||||| | | ||| ||||| |||||| || ||||| |||||| || || ||| Sbjct 6313 TCGGCGGACAAGGACGCGGACCCGGACGACATGGAACAACTTGCGAAGGCCAATCCTTCG 6254 Query 1678 TATCCGCACCGGACCGGCGAACGCG-CGATCCGGCGCATGAGGAAGAACCTC---ACCGA 1733 | ||| ||||| ||| || || | || || ||| ||| ||||||||||| | ||| Sbjct 6253 TTTCCACACCGCACC-CCGCTCGAGTCGGTCATGCGGATGCGGAAGAACCTCAAGAACGA 6195 Query 1734 AGAGTCGTTCCTACGTGAGGCGCTGGGCATCT 1765 || |||||| ||||||||| ||||||||| Sbjct 6194 GGACTCGTTCAAGCGTGAGGCGATGGGCATCT 6163 >seq1401 Length=3734 Score = 109 bits (120), Expect = 2e-19 Identities = 298/451 (66%), Gaps = 38/451 (8%) Strand=Plus/Minus Query 1354 AACGGCTCGCGCATCCTGTTCGGCGCGCGGGAACACGGGTTCGGTCTGGGGTTCGCCGGC 1413 |||||||| || ||| ||||||| || || || ||| ||||| | || |||||||| Sbjct 1046 AACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCGCGGCTTCGCCGGT 987 Query 1414 GTCGGCGTCCTGGTGCTCGACGAGGCGCAGCGCGTCACCGAACAGGCGATGGACGACCTC 1473 |||| |||| ||||| ||| ||||||||| | || | | |||| | || ||| | Sbjct 986 GTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAGGCCCTTGAGGACATG 927 Query 1474 ATTCCGACGATGAACACGGTCGC-GAACCCGCTGATCCTGATGACGGGCACCCCGCCGCG 1532 | || | | ||| | ||| ||||||||| ||| | ||| |||||||||||| || Sbjct 926 GTGCCCGCCACCAACGCC-TCGAAGAACCCGCTCATCATCCTGATGGGCACCCCGCCCCG 868 Query 1533 GCCGACGGATCACGGCGAAGTGTT-----CGCGCGGCACCG------------GCAGGAA 1575 || || | |||||||| ||| | ||| | | || || ||| Sbjct 867 CCCAGTCGACCCCGGCGAAGCGTTCCGCACCCGCCGAAACGAAGCGATCGAGCTCAAGAA 808 Query 1576 GCAC----TGGACGGCGAGG---CCGAA-GGGTC--GCTGTACGTCGAGTTCTCCGCGGA 1625 || | | ||||||| ||||| || | ||| |||||||| || ||| || Sbjct 807 GCTCGCCGCCGCGGGCGAGGACACCGAATCGGACATGCTCTACGTCGAACTCGGCGCAGA 748 Query 1626 CGACGGCGCCGACCCCGACGACCGGGCGCAACTGCGGAAGGCGAACCCGTCGTATCCGCA 1685 | || |||||||| |||||| ||| || | ||||| ||||| || || ||||| Sbjct 747 CCCCGACGCCGACCTGGACGACTGGGATCAGGTCGCCAAGGCCAACCCCTCCTACCCGCA 688 Query 1686 CCGGACC---GGCGAACGCGCGATCCGGCGCATGAGGAAGAACCTCAC---CGAAGAGTC 1739 ||| ||| ||||| ||||||| |||| | ||||||||| | ||| || || Sbjct 687 CCGCACCCCACGCGAA---GCGATCCTCCGCAACCGCAAGAACCTCGCCGACGACGACTC 631 Query 1740 GTTCCTACGTGAGGCGCTGGGCATCTGGGAC 1770 | || || || | || |||||||||||| Sbjct 630 CTACCGCCGAGAAGGCCTCGGCATCTGGGAC 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144387307146420