Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028936.1 Length=59052 Score E Sequences producing significant alignments: (Bits) Value seq1401 134 5e-27 seq2028 123 9e-24 >seq1401 Length=3734 Score = 134 bits (148), Expect = 5e-27 Identities = 391/588 (66%), Gaps = 22/588 (4%) Strand=Plus/Minus Query 902 CCGAG-GGCATCGTGTCGACGTCGTGGCCGTCTGTACGCCACGAGTGCAACGTCAACATG 960 ||||| || ||||||||||| ||||| | || || || ||||| || ||| ||| Sbjct 1421 CCGAGTGGGATCGTGTCGACCGGCTGGCCCGCGGTGCGGGACCAGTGC--CG-CAAGATG 1365 Query 961 GGTCTGTTCTTC--GACCGCTGGCAGGACGACCTCGGAAAGCTGGTGTGTGCCAAGCGTT 1018 || || | || ||| ||||||| | |||||| | || |||||||| Sbjct 1364 GGC--GTCCGTCACGACGAATGGCAGGCAGGCCTCGGGCGCGCGATGCTCGCCAAGCGCG 1307 Query 1019 CCGATGGCCTGTACGCGGCCGACATGTTCGCTATG------TCGATCCCGCGACAGACCG 1072 || || |||||||| |||| ||| || || |||||| || ||| || Sbjct 1306 CCAGCGGACTGTACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGCCGCCAGGTCG 1247 Query 1073 GCAAGACCTACTTCCTCGGCGCCCTGGTGTTCGCGCTGTGCAGGATGACGCCCG--GCAC 1130 ||||||| | | | |||| | | | ||||| || |||| || |||| || | Sbjct 1246 GCAAGACGTTCACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCTT-CCCGAAGCTC 1188 Query 1131 AACGGTGATCTGGACAGCGCACCGGACCCGCACTGCTGCGGAGACGTTCAAGTCGATGCA 1190 | |||| |||||||| ||||||| ||||||| | ||||||||| ||||| |||| Sbjct 1187 A-CGGTCATCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGCTGCA 1129 Query 1191 GGCGCTCGCCAAGC-GCGAGCAGATCGCCCCGCACATCCGCGCGGTGCACACCGGCAACG 1249 || ||||| || ||| | || | |||||||| ||||| | | | | | |||| Sbjct 1128 GGGCTTCGCCCAGAAGCG-GAAGGTGGCCCCGCATATCCGGCAGATCCGCCGAGTGAACG 1070 Query 1250 GCAAAGAGGCTGTGCTGTTCTCCAATGGCAGCCGAATCCTGTTCGGTGCCCGCGAGAAGG 1309 | | || | ||| || ||| ||| ||| ||||||||||||||||| | Sbjct 1069 GGCAGCAGCAGATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCG 1010 Query 1310 GCTTTGGTCGCGGTTTCGCCAAGGTCGACGTCCTGATTTTCGACGAGGCGCAGATCCTCA 1369 |||| || ||||| |||||| ||||||||| || | ||| ||||||||||||||| Sbjct 1009 GCTTCGGCCGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCG 950 Query 1370 CCGAGAACGCGATGGACGACATGATCCCGGCGACCAACGCCGCGCCGAACGGCCTGGTGT 1429 | | || || | || |||||| | || || ||||||||| || |||| || | Sbjct 949 GCAACAAGGCCCTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCATCA 890 Query 1430 TGTTCGCGGGCACGCCGCCGAAGCCGAGT-GATCCCGGCGAGGTGTTC 1476 | | |||||| ||||| ||| ||| || |||||||| | |||| Sbjct 889 TCCTGATGGGCACCCCGCC-CCGCCCAGTCGACCCCGGCGAAGCGTTC 843 >seq2028 Length=10780 Score = 123 bits (136), Expect = 9e-24 Identities = 300/448 (67%), Gaps = 26/448 (6%) Strand=Plus/Minus Query 1052 TGTCGATCCCGCGACAGACCGGCAAGACCTACTTCCTCGGCGCCCTGGTGTTCGCGCTGT 1111 |||| ||||| |||||| || ||||| | | | ||||| | | ||||||||| Sbjct 6846 TGTCAATCCCTCGACAGGTTGGTAAGACATTCCTAGTCGGCATGATCATCATCGCGCTGT 6787 Query 1112 GCAGGATGACGCCC-GGCACAACGGTGATCTGGACAGCGCACCGGACCCGCACTGCTGCG 1170 ||| ||||||| ||| || || | | ||||||||||| || || || || || Sbjct 6786 GCATTCTGACGCCGAGGCTCACCG-TCTTGTGGACAGCGCATCGCACGAAGACAGCAACG 6728 Query 1171 GAGACGTTCAAGTCGATGCAGGCGCTCGCCAAGCGCGAGCAGATC----GCCCC---GCA 1223 |||| ||| || | ||||||| | | |||| || |||| ||| | || Sbjct 6727 AAGACCTTCCAGACCATGCAGGGCATGGTCAAGAAGAAGAAGATTCGGGGCCACCTTGCT 6668 Query 1224 CAT--CCGCG----CGGTG--CACACCGGCAACGGCAAAGAGGCTGTGCTGTTCTCCAAT 1275 | | |||| |||| | ||| | ||| ||| | | | | | |||| ||| Sbjct 6667 CCTGGCCGCAATGACGGTATTCGCACAGCCAATGGCGAGCAAGAGATCCGGTTCCGCAAC 6608 Query 1276 GGCAGCCGAATCCTGTTCGGTGCCCGCGAGAAGGGCTTTGGTCGCGGTTTCGCCAAGGTC 1335 |||||| ||| ||||||| || || ||| || || || || || |||| | ||||| Sbjct 6607 GGCAGCGTGATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGTC 6548 Query 1336 GACGTCCTGATTTTCGACGAGGCGCAGATCCTCACCGAGAACGCGATGGACGACATGATC 1395 ||| || | | ||||| |||||||||||||| |||||||| ||| |||| |||||| || Sbjct 6547 GACATCGAGGTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGTC 6488 Query 1396 CCGGCGACCAAC--GCCGCGCCGAA-------CGGCCTGGTGTTGTTCGCGGGCACGCCG 1446 | ||||| ||| | | || | || || ||| |||| ||| ||||||||| Sbjct 6487 GCAGCGACGAACCAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGCACGCCC 6428 Query 1447 CCGAAGCCGAGTGATCCCGGCGAGGTGT 1474 ||| | ||| |||||| ||||||| || Sbjct 6427 CCGCGGGCGACTGATCCTGGCGAGGAGT 6400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188836569907560