Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028947.1 Length=62738 Score E Sequences producing significant alignments: (Bits) Value seq1401 120 1e-22 seq2028 89.7 2e-13 >seq1401 Length=3734 Score = 120 bits (132), Expect = 1e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1499 TTCACGAACGGCTCACGGATTCTGTTCGGCGCCCGCGAAAAAGGCTTCGGTCGTGGTTTC 1558 |||| ||||||||| ||||| ||||||| |||||||| |||||||| || || ||| Sbjct 1052 TTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCGCGGCTTC 993 Query 1559 GCGAAGGTCGACGTGCTGATCTTCGACGAGGCGCAGATTCTCACCGAAAACGCAATGGAC 1618 || |||||||| || | ||| ||||||||||| ||| | | || || | || Sbjct 992 GCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAGGCCCTTGAG 933 Query 1619 GACATGGTGCCGGCGACGAACGCGTCGCCGAACGCGCTGATCCTGCTGGCCGGCACACCG 1678 ||||||||||| || || ||||| ||| |||| |||| ||| | ||| ||||| ||| Sbjct 932 GACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCATCATCCTGATGGGCACCCCG 873 Query 1679 CCGAAGCCAACGGACCCGGGTGAGGTGTTCACCAATCTGCGGCAGGAAGCGCTCGA 1734 || ||| ||||| || || | |||| || | || | |||||| |||| Sbjct 872 CCCCGCCCAGTCGACCCCGGCGAAGCGTTCCGCACCCGCCGAAACGAAGCGATCGA 817 >seq2028 Length=10780 Score = 89.7 bits (98), Expect = 2e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1521 TGTTCGGCGCCCGCGAAAAAGGCTTCGGTCGTGGTTTCGCGAAGGTCGACGTGCTGATCT 1580 |||||||||| || || || ||||| ||||| |||| |||||||| | | ||| Sbjct 6594 TGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGTCGACATCGAGGTCT 6535 Query 1581 TCGACGAGGCGCAGATTCTCACCGAAAACGCAATGGACGACATGGTGCCGGCGACGAAC 1639 |||| ||||||||||| || ||||| || || |||| |||||||| | ||||||||| Sbjct 6534 TCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGTCGCAGCGACGAAC 6476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200627825892130