Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq802 1021 0.0 >seq802 Length=2299 Score = 1021 bits (1132), Expect = 0.0 Identities = 1627/2288 (71%), Gaps = 82/2288 (4%) Strand=Plus/Minus Query 38341 GTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTA 38400 |||||| || || ||||| || ||||| |||||||||||||||||| ||||||||| Sbjct 2292 GTCGCCGACGCTGG-GAGCAGCGCGGCCATATACTCGGCCGGGTAGTGCTCCTTCAGGTA 2234 Query 38401 CGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCC 38460 || || | |||| || || |||||||| || ||||| ||||||||||| ||||| | Sbjct 2233 GGCGGTCCAGTAGCTGACGACGCCGTACGCGGCCGAGTGGGCCTTGTTGAACGCGTAGTC 2174 Query 38461 GGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCGTCCGAGTAGCCTCGCTC 38520 | ||| || | || | |||||| | |||| ||| || || || ||| |||| ||||| Sbjct 2173 CGAGAACGGGAGCAGGATGTCCCAGAGCGCCTTGATCGCCGCCTCGGAGAAGCCGCGCTC 2114 Query 38521 GCTTGCTCCCTTCTG-GAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTT-- 38577 ||| | || | | |||| | || ||| |||| | ||| |||| ||||||||| Sbjct 2113 -CTTCATGCCGCCCGAGAAGCCCTCGTACTGCTTGTCGAGC---TCGGACTTCTTCTTCT 2058 Query 38578 -GCCCATGGCGCGACGGAGAAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCG 38636 |||||| ||||| ||||| | ||| || || ||||| | | | ||||||| ||| | Sbjct 2057 TGCCCATCGCGCGGCGGAGGATGTCAGCTTGGCCGAGCGAGAAGCCGGCCACCCGCTGAG 1998 Query 38637 CCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGG 38696 | | | ||||||||||| |||||||| || ||| |||||| || ||||| || Sbjct 1997 CGATCGACATGACCTGCTCCTGATAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCCT 1938 Query 38697 CCAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCTCCTGCTGCCCGTTCTTGCGGA 38756 |||||| ||||| | |||||| |||||||| |||||| |||| | ||||||||||| | Sbjct 1937 TCAGCGGTTCCTCGAGCTCGGGATGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGCA 1878 Query 38757 GGGCGTAGTTCGTGTGCGAGCCCATGCCCATCGGACCCGGACGGTACAGCGCCACGACGG 38816 | |||||||| ||||||||| | ||||| || ||||| ||||||||||| | || | Sbjct 1877 GCGCGTAGTTGGTGTGCGAGTCGGCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACCG 1818 Query 38817 CGGAGATGTCCTCGAACTGGTCCGGCTTCAGCAGGCGGAGCAGGGAGCGCATCGCGCCGC 38876 | |||||||||||||| | ||| ||||||| ||||| |||||| |||||| | ||||| Sbjct 1817 CCGAGATGTCCTCGAAGTTGTCGGGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCGC 1758 Query 38877 CGTCGAGCTGGAACACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTACGTCGCGGGGT 38936 |||||||||||||||| |||||||||||| | ||| ||||| ||||| | | | || Sbjct 1757 CGTCGAGCTGGAACACGCCGAGCGTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCGT 1698 Query 38937 CATCCAGCGGGATGTTCTCGATGTCGACGTGCTCACCACGGTTGCGGCGGATGTTCTCGA 38996 | || ||| | | ||||| ||||| | || || |||||| ||||||||||||||| Sbjct 1697 CGTCGAGCTCCAGGCGCTCGAGGTCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCGA 1638 Query 38997 CCGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCAGCAGGCCCA 39056 |||||| |||||||||||||| || ||||| |||||||||||||| | |||||| | Sbjct 1637 GCGCGTCCGAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCGA 1578 Query 39057 GAGCCTCGCAGCTCGGGTAGTCGAACTGCGTGATCGTTACGCCGTCC-GCAGGCCGCACC 39115 | |||||||| | ||||||||||||||||||| | ||||||| || | || | Sbjct 1577 GGCCCTCGCAGGTTGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCG-CGTTTC 1519 Query 39116 CACGTCGGGATGTGATCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACG 39175 | || ||| |||| |||||| ||| |||||||| || || || ||||||||| Sbjct 1518 TGCAGGGGAATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCCGCGGCGTGCACG 1459 Query 39176 CCCATCTGCCGGACGAGACCTTCGAGGCCACGCGCGAGGTCAATGACCTCCTTCGCGTCC 39235 ||| |||||| || || |||||||| |||| ||| || ||||| || Sbjct 1458 CCCCACTGCCGCTTCAGGCCCTCGAGGCCGAGCGCCGTGTCGTACACGAGCTTCG---CC 1402 Query 39236 TTGTCGTTCTCGTACAGC---GCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCC 39292 | | | |||| ||| ||||||| |||| ||||||| | |||||| |||||||| Sbjct 1401 TCGGGATCCTCGGTGAGCACGGCCCGGAACTCGGCCGCCTCCTTGTAGCGAGGGTGCTCG 1342 Query 39293 GGGTTGGTGATGCCCTCCAGGGGCATCGACGCGCCCATCACATCGGCCGGGTACGCCTTG 39352 || | |||||||||| || || || | |||| || ||| ||| |||||| Sbjct 1341 GGATCGGTGATGCCCGAGAGCGGGATGTCCTTCGCCATGACGGCGGGCGGCATCGCCTTC 1282 Query 39353 GTCAGCTTCTCGCCGA-CCTGAAAGGGCTTGTCCAGCACGCGGGCCGCGTCCTTCATCGC 39411 || ||||||||||| | | ||| ||| | |||||||| | ||||||||||| ||| Sbjct 1281 GTGAGCTTCTCGCCCATACCGAACGGG-AAGCAGAGCACGCGCGACGCGTCCTTCAGCGC 1223 Query 39412 GTTGCGGGCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTT 39471 | | ||||||| | ||||| || |||| || || || ||| ||||||||| Sbjct 1222 CTGCTTCGACTTGATCGTTCCGTAGGTGACGATTTGCGCCACGCGCTCGTCGCCGTACTT 1163 Query 39472 CTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTC 39531 ||||||||||||| ||| || ||||| || || || ||||||||||||| ||| | ||| Sbjct 1162 CTCGGTGACGTACATGATGACCTCGCCGCGACGGCGATCATCGAAGTCGACGTCGAAGTC 1103 Query 39532 GGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGG 39591 |||||| |||||||| || ||||| ||||| |||||||||||||| ||||| | | || Sbjct 1102 GGGCATCGAGACGCGATCGGGGTTGAGGAATCGCTCGAAGATGAGTCCGTGCTGCAGCGG 1043 Query 39592 GTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCC 39651 || || |||||||| | | |||||| ||| ||| || || || | |||||||| || Sbjct 1042 ATCGAGATCGGTGATGCGCATGGCGTAGGCGACCATGGATCCCGCGCCCGAGCCACGACC 983 Query 39652 AGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAA 39711 ||||| || | | ||||| ||||||| |||| ||||||||||||||| |||||||| Sbjct 982 GGGGCCCACGCGGATGCCGTTGTCCTTCGACCAGTTGATGAAGTCGGCGACCACGAGGAA 923 Query 39712 GTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTAGTCGACCTGCGTTCGGTG 39771 ||| ||||| |||||||| |||| | | |||||||||| ||| ||||| | || Sbjct 922 GTAGCCGGGGAAGCCCATCTGCGTGATGACGCCGATCTCGTACTCGGCCTGCTTGCGCAC 863 Query 39772 CTCGTCGTCG-TACCCCTGCGGGAAGCGACGGTCCATGCCGATGAGCACCTGCTCGCGGA 39830 | |||| | | || || |||| |||| || || || | |||| || | || Sbjct 862 CGAGTCGGGGATGCCGCT-CGGGTAGCGGTAGTGCAGCCCCTTCTCGACCTCCTTGATGA 804 Query 39831 AGAACTGGCCCTCCGTCTGGCCTTCGGGCACCGGGAAGCGGGGCATGAGGTTCTGGAAC- 39889 | | | |||| |||| ||| ||||||||||| |||| |||||| ||| || Sbjct 803 ACCAGCTGTCCTCGGTCTCGCCATCGGGCACCGGATAGCGCGGCATGTAGTTGGCCGACG 744 Query 39890 --TCGAACATGCCGGTCGTGTCGACCCGGTCAGCGATCTCCAGCGTGGTGCGCATCCCCC 39947 | |||| | | ||| | | || || ||||| ||||||| || || | | Sbjct 743 TGTTGAAC-TCC---ACGTTGCAA--CGCTCGGCGATGAGCAGCGTGTTG----TCGCAC 694 Query 39948 ACGACC-AGATGTCGGAGCTGTCGATG-GCTGCCATCTCGGCGGCCGACTTCAGGTAGTA 40005 || || || ||| || | |||| || | ||||||||| || | ||| |||||||| Sbjct 693 GCGTCCGGGAAGTC---GCGGAAGATGTGCCG-CATCTCGGCCGCGGTCTTGAGGTAGTA 638 Query 40006 CCCTTCGCCCTCGAACCGGAAGCGATCCTCCTGGTAGAGGGACGAGCCGGTCTGGACGCA 40065 || ||| |||||| |||||| | | | || |||| ||||| | ||| ||||| Sbjct 637 GCCCGAGCCGTCGAACTTGAAGCGGTTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGCA 578 Query 40066 CAGCAGGGCGTCGTGGGCCGCAGCCTCCTCGACCCGCGTGTAGTGCGAGTCGTTGGTGAC 40125 ||||| || ||| ||| | || || | | || ||||||| |||||| ||| | Sbjct 577 GAGCAGCGCCGAGTGCGCCTCGGCGTCGGCCTCGTGCACGTAGTGCAGGTCGTTCGTGGC 518 Query 40126 CACCGGGGTGAGACCGAGG-CGCTGACCGAGGCGGTAGAGGTCGTCGCGGACGCGCCGCT 40184 || | | || |||| ||| | ||| | ||||||| |||| || |||| Sbjct 517 GACGAGCGGGATCTTGAGGTCGC-GCGCGATCTTGATGAGGTCGGACTGGACCCGGCGCT 459 Query 40185 CGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGAAGTTGTCCTTCCCGAAGATCTCCC 40244 |||| || || ||||||||||||| ||| ||||||||| || | |||||||| ||| Sbjct 458 CGATGTCGAGCCCGTGGTCCATGAGCTCGCAGAAGAAGTTCTCTCTGCCGAAGATGTCCT 399 Query 40245 GCCACTTCGCAGCCTC--GGCGACGGCCTCCTCGTACTGACCGAGGTTGAGCCGGGTC-- 40300 | ||| || ||| | | || |||||| |||||||| |||||| || |||||| Sbjct 398 GGAACTCGGCCGCCGCCTGCCG--GGCCTCGTCGTACTGCCCGAGGCGCAGGCGGGTCTG 341 Query 40301 -ATCACAGCACCACCGGGGCATCCCGTGGTGCCGATCAGGCCCTCTGCGT-GCTCGGCCA 40358 ||| | || | | |||||| ||||| ||| ||| || |||| ||| | || | || Sbjct 340 GATCTC-GCCCGA--GGGGCAGCCCGTCGTGGTGATGAGCCCCTTGCCGTAGGTCTG-CA 285 Query 40359 CCAGCTCGGCGTCCATGCGCGGGTACTTCCCG-AGCAGACCCTCGCTGTACGAGCG-AG- 40415 ||||||| |||||| ||||| ||| | || || |||| || | |||| || Sbjct 284 GCAGCTCGCGGTCCATACGCGG---CTTGAAGTAGTAG-CCCTGCATGGA--AGCGTAGC 231 Query 40416 AGGAGAGCTTGAACAGGTTGTGCAGGCCGGTCTTGTTCGT---CGCGAGCATGGTCATGT 40472 || ||| ||| |||||||||| ||| || | |||| || |||||||||||||| Sbjct 230 TCGACAGCCGGAAGAGGTTGTGCATGCC---CTCGGTCGTCTCCGAGAGCATGGTCATGT 174 Query 40473 GGGTGTAGGCACC-CCGACCGCTCACGTCGT-ACCGCTTCTGCTCGGGCGTGCCCCACTG 40530 |||||||||| || || ||| |||||||| |||| | || ||||||| | Sbjct 173 GGGTGTAGGCGCCGGCGCCCG-ACACGTCGTCGCCGCCACCGC-------TGCCCCAGCG 122 Query 40531 GACCCGCTCCTGGTCGGAGC---GCGAGCCCGGCGCGACGTACGCCTCGATCCCGATGAT 40587 || || || ||||| || | | ||| || | || ||| |||||||| |||||||| Sbjct 121 CACGCGGGTCTTGTCGGTGCGGTGGGTGCCGGGGGTGAGGTAGGCCTCGATGCCGATGAT 62 Query 40588 GGGCTTGA 40595 || |||| Sbjct 61 CGGGTTGA 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160233016540500