Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq1401 132 2e-26 >seq1401 Length=3734 Score = 132 bits (146), Expect = 2e-26 Identities = 360/540 (67%), Gaps = 16/540 (3%) Strand=Plus/Minus Query 1687 CGACCAATGGCAGGACGACCTCGGAAAGCTGGTATGC--GCCAAGCGATCCGACGGCCTG 1744 |||| ||||||||| | |||||| || | |||| |||||||| || ||| ||| Sbjct 1353 CGACGAATGGCAGGCAGGCCTCGGGC-GCGCG-ATGCTCGCCAAGCGCGCCAGCGGACTG 1296 Query 1745 TATGCGGCCGACATGTTCG----CA--ATGTCGATCCCGAGGCAGACAGGCAAGACCTAT 1798 || || |||| ||| || || || |||||| | ||| |||||||| | Sbjct 1295 TACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGCCGCCAGGTCGGCAAGACGTTC 1236 Query 1799 TTTCTCGGCGCGATCGTGTTCGCGCTCTGCAAGATGACGCCCG--GCACAACGGTGATCT 1856 |||| ||||| | ||||| ||||||| || |||| || || |||| |||| Sbjct 1235 ACCATCGGGTCGATCATCTTCGCCCTCTGCATCATCTT-CCCGAAGCTCA-CGGTCATCT 1178 Query 1857 GGACGGCGCACCGGACACGTACGGCCGCTGAGACGTTCAAGAGTATGCAGGCGCTCGCCA 1916 |||| ||||||| | || || || ||||||||| || |||||| ||||| Sbjct 1177 GGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGCTGCAGGGCTTCGCCC 1118 Query 1917 AGC-GCGAGCAGATCGCCCCGCACATCCTGAACGTGCACACCGGCAACGGCAAAGAGGCC 1975 || ||| | || | |||||||| |||| | | | | | | ||||| | || Sbjct 1117 AGAAGCG-GAAGGTGGCCCCGCATATCCGGCAGATCCGCCGAGTGAACGGGCAGCAGCAG 1059 Query 1976 GTGTTGTTCACCAACGGCAGCCGAATCCTGTTCGGCGCCCGTGAAAAGGGTTTCGGCCGC 2035 | |||| |||||| ||| ||| ||||||| ||||| || || ||||||||| Sbjct 1058 ATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCGC 999 Query 2036 GGTTTCGCCAAGGTCGACGTGCTGATTTTCGACGAGGCTCAGATCCTCAGTGAAAACGCA 2095 || |||||| |||||||| || | ||| ||||| ||||||||| | | || || Sbjct 998 GGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAGGCC 939 Query 2096 ATGGACGACATGGTTCCGGCGACCAACGCCTCGCCTAACGGCCTGATCCTGTTCGCGGGC 2155 | || |||||||| || || |||||||||||| ||| || ||| | | |||| Sbjct 938 CTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCTCATCATCCTGATGGGC 879 Query 2156 ACCCCGCCGAAGCCGACAGACCCCGGCGAGGTGTTCACCAACCTGCGACTGGACGCGATC 2215 |||||||| || ||||||||||| | |||| || || ||| || |||||| Sbjct 878 ACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGTTCCGCACCCGCCGAAACGAAGCGATC 819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193818752768340