Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_028979.1 Length=57253 Score E Sequences producing significant alignments: (Bits) Value seq1401 210 8e-50 seq2028 111 6e-20 >seq1401 Length=3734 Score = 210 bits (232), Expect = 8e-50 Identities = 409/592 (69%), Gaps = 24/592 (4%) Strand=Plus/Minus Query 2528 GCCGACAGGCATTGTCTCGACAGGCTTCTCGGCGGTTCGCGCGAC--GTGCCGCCACATG 2585 ||||| || || || ||||| |||| | ||||| ||| ||| ||||||| | ||| Sbjct 1422 GCCGAGTGGGATCGTGTCGACCGGCTGGCCCGCGGT--GCGGGACCAGTGCCGCAAGATG 1365 Query 2586 GGCCTGGGTTTCGACCGCTGGCAGGACGACCTCGG-CAAGCTGATTTGCGCGAAGCGGCC 2644 ||| | || |||| ||||||| | |||||| | || ||| ||| ||||| | Sbjct 1364 GGCGTCCGTCACGACGAATGGCAGGCAGGCCTCGGGCGCGC-GATGCTCGCCAAGCGCGC 1306 Query 2645 CGATGGGCTGTACGCCGCCGACATGTTCGGCATG------TCGATTCCGCGCCAGACCGG 2698 | || ||||||||||||| ||| |||||| ||||| |||||| ||| Sbjct 1305 CAGCGGACTGTACGCCGCCGGCATCGGCGGCATCATCATCTCGATCTGCCGCCAGGTCGG 1246 Query 2699 CAAGACGTAC-CTGTTGGGTGCGATCGTGTTCGCGCTGTGCGTGGCGGCTGTCGACCGGC 2757 |||||||| | | | |||| ||||| | ||||| || ||| | || || | Sbjct 1245 CAAGACGTTCACCATCGGGT-CGATCATCTTCGCCCTCTGCATCA------TCTTCCCGA 1193 Query 2758 CGCTGACCGTGATCTGGACGGCGCACCGGACCCGTACGGCCGCTGAGACGTTCAAGTCGA 2817 ||| || || |||||||| ||||||| |||| || || ||||||||| ||||| Sbjct 1192 AGCTCACGGTCATCTGGACCGCGCACCACTCCCGCACCTCCAACGAGACGTTCGAGTCGC 1133 Query 2818 TGCAGGGCTTCGCCAAGATGCCGCGCATCGAGCCGTACATCGAGAGGGTGTCGCTG-GCG 2876 |||||||||||||| ||| || | | | ||| | ||| | | | ||| | | | Sbjct 1132 TGCAGGGCTTCGCCCAGAAGCGGAAGGTGGCCCCGCATATCCGGCAGATC-CGCCGAGTG 1074 Query 2877 CGCGGTGAGGAAGCCG-TGATCTTCACCAACGGCTCCCGAATCCTGTTCGGCGCGCGTGA 2935 ||| || | || | | | ||||| ||||||||||| ||| ||||||| || || || Sbjct 1073 AACGGGCAGCA-GCAGATCACCTTCAAGAACGGCTCCCGGATCATGTTCGGTGCCCGCGA 1015 Query 2936 ACGCGGTTTCGGTCGTGGTTTCGCCGGTGTCGACGTGCTGATCTTCGACGAGGCGCAGAT 2995 ||| ||||| || || ||||||||||||||||| || | ||| ||||||||||| Sbjct 1014 GTCCGGCTTCGGCCGCGGCTTCGCCGGTGTCGACGTCGTGGTGGCCGATGAGGCGCAGAT 955 Query 2996 TCTCACCGAGAACGCGATAGACGACATGGTGCCCGCGACGAACGCGGCACCTAACCCGCT 3055 ||| | | || || | || |||||||||||||| || ||||| | |||||||| Sbjct 954 CCTCGGCAACAAGGCCCTTGAGGACATGGTGCCCGCCACCAACGCCTCGAAGAACCCGCT 895 Query 3056 CATCATCCTGGCTGGGACGCCGCCGAAGCCGACCGATCCCGGCGAAGTGTTC 3107 |||||||||| || || ||||| || ||| |||||||||| |||| Sbjct 894 CATCATCCTGATGGGCACCCCGCCCCGCCCAGTCGACCCCGGCGAAGCGTTC 843 >seq2028 Length=10780 Score = 111 bits (122), Expect = 6e-20 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 2903 CAACGGCTCCCGAATCCTGTTCGGCGCGCGTGAACGCGGTTTCGGTCGTGGTTTCGCCGG 2962 ||||||| | ||| |||||||||| ||||| |||| ||||| ||||| |||| || Sbjct 6611 CAACGGCAGCGTGATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGA 6552 Query 2963 TGTCGACGTGCTGATCTTCGACGAGGCGCAGATTCTCACCGAGAACGCGATAGACGACAT 3022 |||||| | | ||||||| ||||||||||| || |||||||| ||| | || ||||| Sbjct 6551 GGTCGACATCGAGGTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACAT 6492 Query 3023 GGTGCCCGCGACGAAC 3038 ||| | ||||||||| Sbjct 6491 GGTCGCAGCGACGAAC 6476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183080020796100