Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq210 352 5e-93 >seq210 Length=3885 Score = 352 bits (390), Expect = 5e-93 Identities = 336/430 (78%), Gaps = 0/430 (0%) Strand=Plus/Minus Query 11477 CTGCCGGAGCCGCTAAGCTTGCTGCAGCCACCATGCCGGGCGGTAAGAAAATAAATCTTA 11536 ||||||||||||| ||||| || || ||||| | || ||||| || ||| ||| || Sbjct 3885 CTGCCGGAGCCGCAAAGCTGGCAGCCGCCACTGTCCCCGGCGGGAAAAAAGTAACCCTGT 3826 Query 11537 ACGTTATGGCTGTTGGTGACGGCGGCGGAAAGCTGCCGGAGCCTGATGCCGGTCAGACGC 11596 | ||||| || |||||||| || || |||||| ||| ||||| ||||||||| Sbjct 3825 CTGCAATGGCCGTGGGTGACGGTAATGGCAAATTGCCGGTGCCGGATGCTGGTCAGACGA 3766 Query 11597 AGCTTGTTAATGAGGTCTGGCGTCATGCTCTGAATAAAATCAGCCAGGACAACCGGTACA 11656 | || || |||||||||||||||| || ||||||||| ||||| ||| ||| | | | Sbjct 3765 AACTGGTGCATGAGGTCTGGCGTCACGCCCTGAATAAAGTCAGCGTGGATAACAAGAATA 3706 Query 11657 GTAATTACATTGTGGCCGAGCTGGTTATTCCGCCGGAGGTGGGCGGCTTCTGGATGCGTG 11716 || || || ||||| || |||||| | ||||| || |||||||||||||||||||||| Sbjct 3705 AAAACTATATCGTGGCTGAACTGGTTGTACCGCCAGAAGTGGGCGGCTTCTGGATGCGTG 3646 Query 11717 AGCTTGGCCTTTACGACGATGAAGGGACGCTGATTGCTGTTGCCAATATGGCCGAAAGCT 11776 | ||||| || || ||||||| || || |||||||| || || || |||| ||||||| Sbjct 3645 AACTTGGTCTGTATGACGATGCCGGAACACTGATTGCGGTCGCTAACATGGTAGAAAGCT 3586 Query 11777 ACAAGCCAGAACTGGCTGAGGGCTCAGGGCGTGCGCAGACATGCCGCATGGTCATTATTG 11836 | ||||| ||||||||||| ||||| |||||||||||||| ||||||||||| ||||||| Sbjct 3585 ATAAGCCTGAACTGGCTGAAGGCTCCGGGCGTGCGCAGACCTGCCGCATGGTTATTATTG 3526 Query 11837 TCAGCAGTGTCGAGTCTGTGGCGCTGTCCATTGACTCAACGATGGTGATGGCGACGCAGG 11896 |||| | || | |||||| | |||| ||||| | | | ||||||||||||||||| Sbjct 3525 TCAGTAACGTGGCGTCTGTTGAGCTGAGTATTGATGCCAGCACGGTGATGGCGACGCAGG 3466 Query 11897 ATTATGTCGA 11906 |||| ||||| Sbjct 3465 ATTACGTCGA 3456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95019858735300