Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3658 102 6e-17 >seq3658 Length=1447888 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| ||||| || ||||| ||||| ||||| | | Sbjct 42471 ATGCAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCTTCT 42412 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| ||||| | || |||||||| Sbjct 42411 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCAG 42352 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| || || ||||| || || | ||| ||| | ||| |||||| Sbjct 42351 CAAAGACTCATCTTTGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAAC 42292 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||||||||| | ||||| || Sbjct 42291 ATCCAGAAAGAGTCCACCCTCCATTTGGT 42263 Score = 82.4 bits (90), Expect = 5e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| ||||| ||||| || ||||| ||||| || || || | Sbjct 42243 ATGCAGATTTTCGTGAAAACGCTCACCGGAAAGACCATCACACTCGAGGTCGAAGCCTCT 42184 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | |||||| ||||| ||||| | || |||||||| Sbjct 42183 GACACCATCGAGAATGTGAAGGC-CAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCA 42125 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 ||| | | || ||||| || || Sbjct 42124 GCAGAGACTCATCTTTGCTGGTAA 42101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337994481464360