Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq515 98.7 3e-16 >seq515 Length=3970 Score = 98.7 bits (108), Expect = 3e-16 Identities = 263/394 (67%), Gaps = 11/394 (3%) Strand=Plus/Minus Query 33936 CTCGAATCGCGAGTACTTACCCAGGAACGCGCACCG-GACAGTGCTTGGCTCGCCGTTGC 33994 || ||| |||||||| | ||| |||||||| |||| ||| |||| | |||||| | Sbjct 676 CTGGAAGCGCGAGTAGTGGCCCTGGAACGCG-ACCGTGACGGTGCCGGTGGGGCCGTTTC 618 Query 33995 GGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGATAGACCT 34054 | ||||| || | ||| | || ||| ||||| | | | ||||| | ||| || Sbjct 617 GCTGCTTGGCCAGGATGAGGTCGGCCTCGCCGGCGCGCGGATTGTCCTTCTCGTAG--CT 560 Query 34055 CGTCTCG--GTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCG 34112 | |||| || || | || | || |||||| |||||||||| ||| || || ||||| Sbjct 559 GGACTCGCGGTGCAGCAGGATCACCATGTCGGCATCCTGCTCGAGCGCACCCGATTCGCG 500 Query 34113 CAGGTCCGACATCATCGGTCGCTTGTTCGGC-CGCTGCTCCAGGGAGCGGTTGAGCTGCG 34171 |||||| || || |||| ||||| |||||||| | ||||| ||||||| Sbjct 499 CAGGTCGCTGATGGCGGGCATCTTG-TCGGCGCGCTGCTCGGACGCACGGTTCAGCTGCG 441 Query 34172 ACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGCACTGGCGGGACATGT 34231 ||||| |||| || || | | | |||||| | | || || ||| ||||| | | Sbjct 440 ACAGCGCGATGACCGGCACATCGAGCTCCTTCGAGAGCAGTTTGAGGGCACGGGAGAACT 381 Query 34232 CGCTGACGTCCTCGGTGCGAGT---TGACTTGCCGGAGCTCTCCAGCAACTGCAGGTAGT 34288 | ||||| |||| ||| | ||||| | |||| |||| ||||||||||| Sbjct 380 CACTGACCTCCTGCTGGCGGCTCTCGGACTTCTTGCCGCTCGAGAGCAGCTGCAGGTAGT 321 Query 34289 CCACCACCAGCAGGCTCAACCCATGGCGCTGCTT 34322 | | || | || | || || || |||||||| Sbjct 320 CGATGACGACCATACGCAGGCCGTGCCGCTGCTT 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160457006778300