Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_030930.1 Length=46570 Score E Sequences producing significant alignments: (Bits) Value seq494 93.3 1e-14 >seq494 Length=2605 Score = 93.3 bits (102), Expect = 1e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39059 CAGTTCGCGTCCGGGTCGATGCTGCAGCGCAAGCTTCGCGTCGGCTATGCGCGCGCCGGA 39118 ||||||| ||| ||||||||||||||||||||||||||||||| ||| ||||| Sbjct 1924 CAGTTCGGCTCCACCTCGATGCTGCAGCGCAAGCTTCGCGTCGGCTTCGCGAAGGCCGGC 1865 Query 39119 CGCCTGCTCGACGAGCTCGAGGCGCTCGACATCGTCGGCCCCGCACAGGGCAGCAAGGCC 39178 ||||| | ||| | | ||| | | |||||||| ||||| | |||| |||||| Sbjct 1864 CGCCTCATGGACCTGATGGAGTCCCGGGACATCGTGGGCCCGTCCGAGGGATCGAAGGCC 1805 Query 39179 CGCGAGGTGCTCGT 39192 ||||| || ||||| Sbjct 1804 CGCGACGTCCTCGT 1791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148895910647280