Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3663 178 2e-39 >seq3663 Length=2118579 Score = 178 bits (196), Expect = 2e-39 Identities = 317/462 (69%), Gaps = 3/462 (1%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || || || || || | |||||||| ||||| || || || | ||||||||||||| Sbjct 1960493 GCTGGCTTCGTGCGCAAGTAGTACATTCCAGTCTTAAGGCCTTGCTTCCATCCGTAGAAG 1960434 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 ||||| || | | | || || || | || || |||||||| | || ||| | Sbjct 1960433 TGCATCGAAGTGATTGCAGCGTAGCTTGGTTTAGCCATGTGAATATTGAGAGATTGAGAT 1960374 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| ||||| ||||| | |||||| ||||| | || || |||||||| |||||| Sbjct 1960373 TGATCAATGAATGCTCCACGATCAGCAGCCATCTCAATGATTTCCTTTTGAGAGATTTCC 1960314 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATGGAA 77039 || | ||| | | | || || ||| |||| | | || | || |||||||| Sbjct 1960313 CACACAGTGAGATAGAGCTCCTTAATGTCAGCTGGGATTTCTGGGATGTTCTGAATGGAT 1960254 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 || | | ||| | ||||| || |||||| |||||||| ||||| ||| Sbjct 1960253 CCGTTGTTGGCTATGAGGCGGTTCTTCATTTCATCAGTCCACAATCCTCTCTCAACCAAA 1960194 Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159 | | || | ||| ||||| ||||| || || |||||||| | || | ||||| || Sbjct 1960193 TCCTTGAGCATATGTGGATTGACTATCTGGAAGTCTCCAGAAAGAACACGACGAGAATAG 1960134 Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219 || || ||| ||||| || | || ||||||||||| | ||||||||||||||||||| Sbjct 1960133 ATGTTTGAGGTGTATGGCTCAATCGACTCATTGTTTCCAAGAATTTGAGCAGTAGAAGCA 1960074 Query 77220 GTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 77261 |||||||| || |||| || | ||| || | || || ||| Sbjct 1960073 GTTGGCATTGGAGCCATCAGAAGACTGTTGCGGATTCCGTGT 1960032 Score = 176 bits (194), Expect = 6e-39 Identities = 472/721 (65%), Gaps = 8/721 (1%) Strand=Plus/Minus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||| || || |||||||| ||||| | ||| |||||||| ||||||||||| || Sbjct 1959079 TTCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCATTCGCATGGGCACATCAGAGA 1959020 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| | ||| | || || || ||||| |||||||| || ||||| ||||| | || Sbjct 1959019 CCAATTCTGATCCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGAGGAA 1958960 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 | || || | | | ||||| ||| || ||||| || | ||||| | Sbjct 1958959 CAAGTCACGAGCACGCTCCTCTTCTGGTCCAGTGTTCTTGCGGAGTGACACGAACTCGAA 1958900 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCC 78163 || ||| | ||||||||| || || || || || | |||| || || || || ||||| Sbjct 1958899 AACATCGGCATGCCATGGCTCGAGGTAGATGGCGAATGCTCCTGGACGCTTGTTTCCTCC 1958840 Query 78164 CTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGA 78223 ||||| | ||| | || |||||||| || || | | |||||| || | ||||| || Sbjct 1958839 TTGATCGACATAACGAGCAGTGTTATTGTAGACACGAAGCATTGGTATGAGTCCGTTCGA 1958780 Query 78224 TGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT--- 78280 |||||| || ||||||| || | || | || ||||| || |||| || Sbjct 1958779 TGTTCCGTTAGTTCCAGCGATGACAGAACCGGTGGCACGAAT----CTTGTGGACATTGA 1958724 Query 78281 -CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATAC 78339 ||| |||||||| || |||| || || ||||| || | ||||| || |||||||| | Sbjct 1958723 GCCCGATTCCTCCAGCGCTCTTCGAGATGAGAGCACACTGCTTCAAAGTGTCGTAGATTC 1958664 Query 78340 CCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAG 78399 | || || || |||| | || | || || |||||||| || | | Sbjct 1958663 CAAGAATCGAATCCTCGCTCATCGTCAGCAAGAAGCAAGACGACATTTGTGGACGGCATG 1958604 Query 78400 TTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGT 78459 |||| | || || | || ||||| ||||| || | | || || | ||||||| Sbjct 1958603 TTCCAGAGTTGAAGAGAGTTGGAGAAGCATGAGTCATGTAGCGCTCCGACATCAGATTGT 1958544 Query 78460 ATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACA 78519 | || || || || | | |||||| | || ||||| | | ||||||||||||| Sbjct 1958543 ACGTCTCGATGGCAGCAGCAATGTCCTCTCCGTGGATTCCGATAGAAACACGCATCAACA 1958484 Query 78520 TATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAG 78579 | || || || | ||||| | | || || ||||| | | ||| || ||| | || Sbjct 1958483 TCTGTTGTGGCCGCTCAACGATTTCCTTGTTGATTTTGAGAAGGTAGGAACGTTCAAGAG 1958424 Query 78580 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTT 78639 |||| || || || ||| |||| || | || | ||||| | || |||| || || | Sbjct 1958423 TTTTGAATCCGAAGTAGGTGTAGGAGTAATCACGATCGTAGACGATCGCAGAGTTCAGCT 1958364 Query 78640 T 78640 | Sbjct 1958363 T 1958363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694636932068800