Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_031035.1 Length=61626 Score E Sequences producing significant alignments: (Bits) Value seq1401 129 2e-25 seq2028 93.3 2e-14 >seq1401 Length=3734 Score = 129 bits (142), Expect = 2e-25 Identities = 409/621 (66%), Gaps = 25/621 (4%) Strand=Plus/Minus Query 1365 GCTGTCTGAGGTCGCACGGCACGTAATCAAGCCAGAAGGCATCGTGTCGACGTCGTGGCC 1424 ||| ||||||||||| ||| | || ||| || ||||||||||| ||||| Sbjct 1452 GCTATCTGAGGTCGCCAAGCATCTGGTCCTGCCGAGTGGGATCGTGTCGACCGGCTGGCC 1393 Query 1425 CGCTGTGCGTCACGAGTGCAACGTCAACATGCGGCTGTTCTTC--GATCAGTGGCAGGAC 1482 ||| ||||| || ||||| || ||| ||| ||| || | || || | ||||||| Sbjct 1392 CGCGGTGCGGGACCAGTGC--CG-CAAGATG-GGC-GTCCGTCACGACGAATGGCAGGCA 1338 Query 1483 GACCTCGGGAAGCTGGTTTGCGCCAAACGATCCGACGGTCTGTTCGCGGCCGACATGTTC 1542 | ||||||| | | |||||| || || ||| |||| ||| |||| ||| | Sbjct 1337 GGCCTCGGGCGCGCGATGCTCGCCAAGCGCGCCAGCGGACTGTACGCCGCCGGCATCGGC 1278 Query 1543 GCGATG------TCGGTGCCACGTCAGACAGGCAAAACGTACTTCCTCGGTGCGCTGGTG 1596 | || ||| | || ||| ||||| |||| | | |||| || | | Sbjct 1277 GGCATCATCATCTCGATCTGCCGCCAGGTCGGCAAGACGTTCACCATCGGGTCGATCATC 1218 Query 1597 TTCGCGCTGTGCAAGATGAACGCCG--GCACGACGGTGATCTGGACTGCGCACCGCACCC 1654 ||||| || |||| || | ||| || | ||||| |||||||| ||||||| | ||| Sbjct 1217 TTCGCCCTCTGCATCATCTTC-CCGAAGCTC-ACGGTCATCTGGACCGCGCACCACTCCC 1160 Query 1655 GCACCGCGGCCGAAACGTTCAAGAGCATGCAGGCGCTCTCGCTGCGCGAAG----AGATC 1710 ||||| | ||| |||||| || |||||| ||| |||| | |||| || | Sbjct 1159 GCACCTCCAACGAGACGTTCGAGTCGCTGCAGG-GCT-TCGC--CCAGAAGCGGAAGGTG 1104 Query 1711 GCACCGCACATCGAGCAGGTTCTCACCGGCAACGGTAAAGAGGCCGTGCTGTTCACCAAC 1770 || ||||| ||| |||| | | | | ||||| | || | |||| ||| Sbjct 1103 GCCCCGCATATCCGGCAGATCCGCCGAGTGAACGGGCAGCAGCAGATCACCTTCAAGAAC 1044 Query 1771 GGTTCTCGAATCCTGTTCGGCGCCCGCGAAAAGGGCTTCGGTCGTGGTTTCGCGAAGGTC 1830 || || || ||| ||||||| |||||||| |||||||| || || ||||| ||| Sbjct 1043 GGCTCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCGCGGCTTCGCCGGTGTC 984 Query 1831 GACGTGCTGATTTTCGACGAGGCGCAGATTCTCACCGAGAACGCAATGGACGACATGGTG 1890 ||||| || | ||| ||||||||||| ||| | | || || | || ||||||||| Sbjct 983 GACGTCGTGGTGGCCGATGAGGCGCAGATCCTCGGCAACAAGGCCCTTGAGGACATGGTG 924 Query 1891 CCGGCGACGAACGCGTCACCTAACGCGCTGATCCTGCTGGCCGGCACACCGCCGAAGCCG 1950 || || || ||||| || ||| |||| ||| | ||| ||||| ||||| || Sbjct 923 CCCGCCACCAACGCCTCGAAGAACCCGCTCATCATCCTGATGGGCACCCCGCCCCGCCCA 864 Query 1951 ACCGATCCCGGCGAGGTGTTC 1971 ||| |||||||| | |||| Sbjct 863 GTCGACCCCGGCGAAGCGTTC 843 >seq2028 Length=10780 Score = 93.3 bits (102), Expect = 2e-14 Identities = 140/199 (70%), Gaps = 9/199 (5%) Strand=Plus/Minus Query 1780 ATCCTGTTCGGCGCCCGCGAAAAGGGCTTCGGTCGTGGTTTCGCGAAGGTCGACGTGCTG 1839 ||| |||||||||| || || || ||||| ||||| |||| |||||||| | | Sbjct 6598 ATCATGTTCGGCGCTCGTGAGGGCGGGTTCGGGCGTGGCTTCGACGAGGTCGACATCGAG 6539 Query 1840 ATTTTCGACGAGGCGCAGATTCTCACCGAGAACGCAATGGACGACATGGTGCCGGCGACG 1899 | ||||| ||||||||||| || |||||||| || |||| |||||||| | |||||| Sbjct 6538 GTCTTCGATGAGGCGCAGATCCTGACCGAGAAGGCGCTGGAAGACATGGTCGCAGCGACG 6479 Query 1900 AACGCGTCAC--CTAA-------CGCGCTGATCCTGCTGGCCGGCACACCGCCGAAGCCG 1950 ||| ||| | | || ||||||| | | | ||||| || ||| | || Sbjct 6478 AACCAGTCTCGGCAAAAGTCGGGCGCGCTGCTGTTCTTCATGGGCACGCCCCCGCGGGCG 6419 Query 1951 ACCGATCCCGGCGAGGTGT 1969 || ||||| ||||||| || Sbjct 6418 ACTGATCCTGGCGAGGAGT 6400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197073010937520