Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3663 179 5e-40 >seq3663 Length=2118579 Score = 179 bits (198), Expect = 5e-40 Identities = 330/483 (68%), Gaps = 3/483 (1%) Strand=Plus/Minus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 |||||||||| | | | ||||| || || || | |||||||| ||||| || || Sbjct 1960514 GTGAACTGAACAGCATTGACAGCTGGCTTCGTGCGCAAGTAGTACATTCCAGTCTTAAGG 1960455 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATA 75496 || | ||||||||||||| ||||| || | | | || || || | || || Sbjct 1960454 CCTTGCTTCCATCCGTAGAAGTGCATCGAAGTGATTGCAGCGTAGCTTGGTTTAGCCATG 1960395 Query 75497 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 75556 |||||||| | || ||| |||||| ||||| ||||| | |||||| ||||| | || Sbjct 1960394 TGAATATTGAGAGATTGAGATTGATCAATGAATGCTCCACGATCAGCAGCCATCTCAATG 1960335 Query 75557 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGA 75616 || |||||||| |||||||| | ||| | | | || || ||| |||| | Sbjct 1960334 ATTTCCTTTTGAGAGATTTCCCACACAGTGAGATAGAGCTCCTTAATGTCAGCTGGGATT 1960275 Query 75617 TTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTC 75673 | || | || |||||||||||| | | ||| | ||||| || |||||| || Sbjct 1960274 TCTGGGATGTTCTGAATGGATCCGTTGTTGGCTATGAGGCGGTTCTTCATTTCATCAGTC 1960215 Query 75674 CACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCA 75733 |||||| |||||| ||| | | || | ||| ||||| || || || || |||||| Sbjct 1960214 CACAATCCTCTCTCAACCAAATCCTTGAGCATATGTGGATTGACTATCTGGAAGTCTCCA 1960155 Query 75734 GACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCC 75793 || | || | |||| || || || ||| ||||| || | || ||||||||||| Sbjct 1960154 GAAAGAACACGACGAGAATAGATGTTTGAGGTGTATGGCTCAATCGACTCATTGTTTCCA 1960095 Query 75794 AAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCA 75853 | |||||||||||| |||||||| ||||| || |||| || | ||| || | || || Sbjct 1960094 AGAATTTGAGCAGTAGAAGCAGTTGGCATTGGAGCCATCAGAAGACTGTTGCGGATTCCG 1960035 Query 75854 TGT 75856 ||| Sbjct 1960034 TGT 1960032 Score = 165 bits (182), Expect = 1e-35 Identities = 445/681 (65%), Gaps = 0/681 (0%) Strand=Plus/Minus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 ||| || || |||||||| ||||| | || || ||||| || ||||||| || Sbjct 1959079 TTCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCATTCGCATGGGCACATCAGAGA 1959020 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| | ||| | || || || ||||| |||||||| || ||||| ||||| | || Sbjct 1959019 CCAATTCTGATCCTTCTCGACACGCTTCATGAAGAGATCCGGAATCCAGAGAGCGAGGAA 1958960 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 | || || | | ||||| ||| || ||||| || | |||||| | Sbjct 1958959 CAAGTCACGAGCACGCTCCTCTTCTGGTCCAGTGTTCTTGCGGAGTGACACGAACTCGAA 1958900 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 || ||| | ||||||||| || || || || || | | || || || || || ||||| Sbjct 1958899 AACATCGGCATGCCATGGCTCGAGGTAGATGGCGAATGCTCCTGGACGCTTGTTTCCTCC 1958840 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGA 76818 ||||| | ||| | ||||||||||| || || | | |||||| || | ||||| || Sbjct 1958839 TTGATCGACATAACGAGCAGTGTTATTGTAGACACGAAGCATTGGTATGAGTCCGTTCGA 1958780 Query 76819 TGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCC 76878 ||| || || ||||||| || | || |||||||| || | | || || Sbjct 1958779 TGTTCCGTTAGTTCCAGCGATGACAGAACCGGTGGCACGAATCTTGTGGACATTGAGCCC 1958720 Query 76879 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTC 76938 |||||||| || | || ||||| |||||||| | ||||| ||||| ||||| || Sbjct 1958719 GATTCCTCCAGCGCTCTTCGAGATGAGAGCACACTGCTTCAAAGTGTCGTAGATTCCAAG 1958660 Query 76939 TATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 76998 || ||| || |||| | || | || || |||||||| || | ||||| Sbjct 1958659 AATCGAATCCTCGCTCATCGTCAGCAAGAAGCAAGACGACATTTGTGGACGGCATGTTCC 1958600 Query 76999 TGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGT 77058 | || || | || ||||| |||||||| | | || || | |||||||| || Sbjct 1958599 AGAGTTGAAGAGAGTTGGAGAAGCATGAGTCATGTAGCGCTCCGACATCAGATTGTACGT 1958540 Query 77059 TTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATG 77118 || || | || | || ||| | || ||||| | || |||||||||||||| || Sbjct 1958539 CTCGATGGCAGCAGCAATGTCCTCTCCGTGGATTCCGATAGAAACACGCATCAACATCTG 1958480 Query 77119 CTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 77178 || || || || || | | || || ||||| | | ||| || ||| | |||||| Sbjct 1958479 TTGTGGCCGCTCAACGATTTCCTTGTTGATTTTGAGAAGGTAGGAACGTTCAAGAGTTTT 1958420 Query 77179 AAAACCAAAATAGTTGTATGA 77199 || || || ||| |||| || Sbjct 1958419 GAATCCGAAGTAGGTGTAGGA 1958399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712901694134400