Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq1506 86.0 2e-12 >seq1506 Length=6761 Score = 86.0 bits (94), Expect = 2e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 26166 AATTTAACAATTGAAAAGTTGTTATTTTCTACACCTCTGAAT-ATTATTGATGTCATCAA 26224 |||| || ||| || ||||| || | || || || | | || || ||| ||||||||| Sbjct 5501 AATTGAAGAATAGAGAAGTTATTTTCTTGTAGAC-TGTCCATGATGATTTTTGTCATCAA 5443 Query 26225 AAAACCTGAGATAACGaaaaaaaCATCAACTCCAGCAAAACCACCCGGTAAAAAAG-ATG 26283 |||||| || ||||| ||||||||||| |||||| ||| ||| || |||||| | || Sbjct 5442 AAAACCAGATATAACAAAAAAAACATCGACTCCAATAAATCCA-CCTGTAAAACCGAATA 5384 Query 26284 GGCTAAAATGGAATACCATAACGGATAAGACCGCAATTGCACGAAGACCATTAATATCTT 26343 | ||||||||| | | || | || || || ||| | | ||||||||||| | Sbjct 5383 TCCCAAAATGGAAAAGAACTACAAACAAAACTGCGTATGCTCTTAATCCATTAATATCGT 5324 Query 26344 TTCTGAATTTATT 26356 ||| ||||| || Sbjct 5323 ATCTAAATTTGTT 5311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133504581449880