Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq802 1043 0.0 >seq802 Length=2299 Score = 1043 bits (1156), Expect = 0.0 Identities = 1631/2290 (71%), Gaps = 86/2290 (4%) Strand=Plus/Minus Query 38993 GTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTA 39052 |||||| || || ||||| || ||||| |||||||||||||||||| ||||||||| Sbjct 2292 GTCGCCGACGCTGG-GAGCAGCGCGGCCATATACTCGGCCGGGTAGTGCTCCTTCAGGTA 2234 Query 39053 CGCCGTGCGGTAGGCGATGAGACCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCC 39112 || || | |||| || || |||||||| || ||||| ||||||||||| ||||| | Sbjct 2233 GGCGGTCCAGTAGCTGACGACGCCGTACGCGGCCGAGTGGGCCTTGTTGAACGCGTAGTC 2174 Query 39113 GGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCACCGTCCGAGTAGCCTCGCTC 39172 | ||| || | || | |||||| | ||||| ||| || | || ||| |||| ||||| Sbjct 2173 CGAGAACGGGAGCAGGATGTCCCAGAGCGCCTTGATCGCCGCCTCGGAGAAGCCGCGCTC 2114 Query 39173 GCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTT--- 39229 | || | |||| | || ||| |||| | || ||||| ||||||||| Sbjct 2113 CTTCATGCCGCCCGAGAAGCCCTCGTACTGCTTGTCGAG---CTCGGACTTCTTCTTCTT 2057 Query 39230 GCCCATGGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAGGATCTGTGC 39289 |||||| || |||||||| | ||| || || || || | | || || | ||| || Sbjct 2056 GCCCATCGCGCGGCGGAGGATGTCAGCTTGGCCGAGCGAGAAGCCGGCCACCCGCTGAGC 1997 Query 39290 CGCCTTCTGCACCTGCTCCTGGTAGATGACCAGCCCGTAGGTCGGCCCCAGGATCTCGGC 39349 | | ||||||||||| ||||||| ||| |||||||||| | | ||||| || Sbjct 1996 GATCGACATGACCTGCTCCTGATAGATGATCAGGCCGTAGGTCGTCTCGAGGATGTCCTT 1937 Query 39350 AAGCGGCTCCTCCACCTCGGGGTGGATCGGCGTGATCGCCTGCTGCCCGTTCTTGCGGAG 39409 ||||| ||||| | |||||| |||||||| ||||||| |||| | ||||||||||| || Sbjct 1936 CAGCGGTTCCTCGAGCTCGGGATGGATCGGGGTGATCGGCTGCAGACCGTTCTTGCGCAG 1877 Query 39410 GGCGTAGTTCGTGTGCGAGCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGC 39469 |||||||| ||||||||| | | ||||| || ||||| ||||||||||||| || || Sbjct 1876 CGCGTAGTTGGTGTGCGAGTCGGCACCCATGGGGCCCGGGCGGTACAGCGCGAGCACCGC 1817 Query 39470 GCTGATGTCCTCGAAGTTGTCCGGCTTCAGCAGGCGGAGCAGTGAGCGCATCGCGCCGCC 39529 |||||||||||||||||| ||||||| ||||| ||||| |||||| | |||||| Sbjct 1816 CGAGATGTCCTCGAAGTTGTCGGGCTTCATGAGGCGCAGCAGGCCGCGCATGGGGCCGCC 1757 Query 39530 GTCGAGCTGGAAGACCGAGAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTAGCAACGTC 39589 |||||||||||| || |||||||||||| | ||| ||||| ||||||| | |||| Sbjct 1756 GTCGAGCTGGAACACGCCGAGCGTGTCGCCGCGGGCGAGCAGTTCGTAGGAGGGCGCGTC 1697 Query 39590 GTCCAGCGGGATGTTCTCCAGGTCGACGTGCTCCCCACGGTTGGCGCGGATGTTCTCGAC 39649 ||| ||| | | ||| ||||||| | || || |||||| |||||||||||||| Sbjct 1696 GTCGAGCTCCAGGCGCTCGAGGTCGAGTTCTTCGCCGCGGTTGAGGCGGATGTTCTCGAG 1637 Query 39650 CGCGTCGCCCATGATCGTGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCACCGCGCCCAG 39709 |||||| |||||||||||||| || ||||| |||||||||||||| | | ||| || Sbjct 1636 CGCGTCCGAGATGATCGTGAGGTTGCGCAGCCCCAGGAAGTCCATCTTGATCAGGCCGAG 1577 Query 39710 GCTCTCGCACTGGGGGTAGTCCCACTGCGTCACGGTCACGCCGTCCGCAGGGCGGACCCA 39769 || |||||| |||||||| ||||||| ||| || ||||||| ||| | Sbjct 1576 GCCCTCGCAGGTTGGGTAGTCGAACTGCGTGACGATCTGGCCGTCCTGCTCGCGTTTCTG 1517 Query 39770 CACCGGGAGGTGATCGACCAACGGCTCGTTGGACATGATCACACCGGCCGCGTGAACGCC 39829 || || | | |||| || ||| ||| | |||||||| || || || ||||| ||||| Sbjct 1516 CAGGGGAATGATGTCGATCAGCGGGTCGCTCGACATGATGACGCCCGCGGCGTGCACGCC 1457 Query 39830 CATCTGCCGGACGAGACCTTCGAGCCCGAGCGCAGTGTCGATGACCTGCTTCGAGTCCGG 39889 | |||||| || || ||||| |||||||| |||||| || |||||| || || Sbjct 1456 CCACTGCCGCTTCAGGCCCTCGAGGCCGAGCGCCGTGTCGTACACGAGCTTCGCCTCGGG 1397 Query 39890 GTCGTTCTCGTACAGC---CCACGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGG 39946 || |||| ||| | |||| |||| ||||||| | |||||| |||||||| || Sbjct 1396 ATC---CTCGGTGAGCACGGCCCGGAACTCGGCCGCCTCCTTGTAGCGAGGGTGCTCGGG 1340 Query 39947 GTTGAAGATGCCCTCCAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGT 40006 | | ||||||| || || || || |||| ||| ||| ||| |||||| || Sbjct 1339 ATCGGTGATGCCCGAGAGCGGGATGTCCTTCGCCATGACGGCGGGCGGCATCGCCTTCGT 1280 Query 40007 CAGCTTCTCGCCGACCTGGAAGGGCTTGTCCAGCACGCGCGCCGCGTCCTTCATCGCGTT 40066 ||||||||||| | ||| || | |||||||||| ||||||||||| ||| | Sbjct 1279 GAGCTTCTCGCCCATACCGAACGGGAAGCAGAGCACGCGCGACGCGTCCTTCAGCGCCTG 1220 Query 40067 GCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTC 40126 || ||||||| ||| |||| |||| || || || || | ||||||||||| Sbjct 1219 CTTCGACTTGATCGTTCCGTAGGTGACGATTTGCGCCACGCGCTCGTCGCCGTACTTCTC 1160 Query 40127 GGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGG 40186 |||||||||| |||| || ||||| || || || ||||||||||||| ||| | |||||| Sbjct 1159 GGTGACGTACATGATGACCTCGCCGCGACGGCGATCATCGAAGTCGACGTCGAAGTCGGG 1100 Query 40187 CATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTC 40246 ||| || ||||| |||||||| ||||| |||||||||||||| |||||| | | || || Sbjct 1099 CATCGAGACGCGATCGGGGTTGAGGAATCGCTCGAAGATGAGTCCGTGCTGCAGCGGATC 1040 Query 40247 CAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGG 40306 || || ||||||| | | ||||||||||| || || || |||||||||| ||||| Sbjct 1039 GAGATCGGTGATGCGCATGGCGTAGGCGACCATGGATCCCGCGCCCGAGCCACGACCGGG 980 Query 40307 TCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTA 40366 || || | | |||||| ||||| | |||| ||||||||||||||| || |||||||| Sbjct 979 GCCCACGCGGATGCCGTTGTCCTTCGACCAGTTGATGAAGTCGGCGACCACGAGGAAGTA 920 Query 40367 GGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACTGAAGCTGCTTGCCATGCTC 40426 | ||||| |||| ||| |||| | | |||||||||||| |||||||| || | Sbjct 919 GCCGGGGAAGCCCATCTGCGTGATGACGCCGATCTCGTACTCGGCCTGCTTGC---GCAC 863 Query 40427 GTAGTCGG---TCCCGTTCGGG-AACCGTCGAGCTGCACCACGGTGGACCTCGTCCTCGA 40482 |||||| | ||| ||||| | | || | || || || | |||||| | || Sbjct 862 CGAGTCGGGGATGCCGCTCGGGTAGCGGTAGTGCAGC-CCCTTCTCGACCTCCTTGATGA 804 Query 40483 ACCACGTAACCTCGGTGTGACCCTCGGGCACGGGGAAGCGGGGCATG----AGGTCGGTG 40538 |||| | ||||||| | || |||||||| || |||| |||||| || || | Sbjct 803 ACCAGCTGTCCTCGGTCTCGCCATCGGGCACCGGATAGCGCGGCATGTAGTTGGCCGACG 744 Query 40539 TGCTCGAACATGCCAGTCGTGTCGACGCGCTCGGCGATCTCCAGCGTGGTCCGCATCCCC 40598 || | |||| ||| ||| | | ||||||||||| ||||||| | || | Sbjct 743 TG-TTGAAC--TCCA--CGTTGCAA--CGCTCGGCGATGAGCAGCGTGTT----GTCGCA 695 Query 40599 CACTCCCAGATGGGAGAGGAGTCGATG-GCCGCCATCTCGGCGGCCGACTTGATGTAGTA 40657 | | || | | | ||| |||| |||| ||||||||| || | ||||| |||||| Sbjct 694 CGCGTCCGGGAAGTCGCGGA--AGATGTGCCG-CATCTCGGCCGCGGTCTTGAGGTAGTA 638 Query 40658 CCCGGAGCCCTCGAACCGGAAGCGGTTCGGGTTGTCGATCGTCGTGCCGGTCTGGACGCA 40717 || ||||| |||||| |||||||||||||| ||||| | ||| | ||| ||||| Sbjct 637 GCCCGAGCCGTCGAACTTGAAGCGGTTCGGGTCGTCGAGGCGGGAGCCCGACTGCACGCA 578 Query 40718 GAGCAGAGCGTCGTGCGCGGTGCTC-TCCTCGGC--CGTG-ACGTAGTGCGAGTCGTTCG 40773 |||||| || |||||| ||| | ||||| |||| ||||||||| |||||||| Sbjct 577 GAGCAGCGCCGAGTGCGC----CTCGGCGTCGGCCTCGTGCACGTAGTGCAGGTCGTTCG 522 Query 40774 TGACCACGGGGGTGAGCGCGAGGT-GCTTGCCCAGCCGGTAGAGGTCGTCGCGGACACGC 40832 || | ||| | | || | ||||| || | | | | | ||||||| |||| || Sbjct 521 TGGCGACGAGCGGGATCTTGAGGTCGCGCG-CGATCTTGATGAGGTCGGACTGGACCCGG 463 Query 40833 CGCTCGATCTCCAGGCCGTGGTCCATGATCTC-CAG--GAAGTACCGGTCCCGACCGAAG 40889 |||||||| || || ||||||||||||| ||| ||| ||||| | || | |||||| Sbjct 462 CGCTCGATGTCGAGCCCGTGGTCCATGAGCTCGCAGAAGAAGTTC---TCTCTGCCGAAG 406 Query 40890 ACCTCCAGGTAC-CGGCCAGCCTCGGCAACGGCCTCGTCGTACTGCCCGAGGTTGAGCCG 40948 | ||| || || ||||| ||| | |||||||||||||||||||||| || || Sbjct 405 ATGTCCTGGAACTCGGCC-GCCGCCTGCCGGGCCTCGTCGTACTGCCCGAGGCGCAGGCG 347 Query 40949 GGTCATGATCGCACCGCCAGGGCATCCCGTGGTGACGATCAGGCCCTCGTTGT-GCTCGG 41007 |||| |||| | || ||||| ||||| ||| ||| || |||| | || | || | Sbjct 346 GGTCTGGATCTCGCCCGAGGGGCAGCCCGTCGTGGTGATGAGCCCCTTGCCGTAGGTCTG 287 Query 41008 CGACCAGGTCGAAGTCCATGCGCGGGTACTTCCCG-AGCAGGCCCTCCTGGTA-CG-AGC 41064 | | ||| ||| |||||| ||||| ||| | || || || | ||| | || ||| Sbjct 286 C-AGCAGCTCGCGGTCCATACGCGG---CTTGAAGTAGTAGCCCTGCATGGAAGCGTAGC 231 Query 41065 GGGAGCTGAGCTTCATGAGGTTGTGCAGGC---CGGTCTTGTTCTCCGCGAGGATCGTGA 41121 || ||| | ||||||||||| || ||||| |||||| ||| || || | Sbjct 230 TCGA---CAGCCGGAAGAGGTTGTGCATGCCCTCGGTC---GTCTCCGAGAGCATGGTCA 177 Query 41122 GGTGCGTGTACGCACC-GCGACCGCTCACGTCGTAACGCTTCTGGTCCTCGGTGCCCCAC 41180 ||| ||||| || || ||| ||| |||||||| ||| | | || ||||||| Sbjct 176 TGTGGGTGTAGGCGCCGGCGCCCG-ACACGTCGT--CGC----CGCCACCGCTGCCCCAG 124 Query 41181 TTGACGCGCTCCTGGTCGAAGC---GCGAGCCCGGAGCCATGTACGCCTCGATGCCGATG 41237 ||||| || |||| || | | ||| || | | ||| ||||||||||||||| Sbjct 123 CGCACGCGGGTCTTGTCGGTGCGGTGGGTGCCGGGGGTGAGGTAGGCCTCGATGCCGATG 64 Query 41238 ATCGGCTTGA 41247 ||||| |||| Sbjct 63 ATCGGGTTGA 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160133820863760