Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_031099.1 Length=44536 Score E Sequences producing significant alignments: (Bits) Value seq494 82.4 2e-11 >seq494 Length=2605 Score = 82.4 bits (90), Expect = 2e-11 Identities = 132/186 (71%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 38275 CGACGACCCCGACACGCTGCTCGTCGACGCGGCGAGGCTGGTGATCGAGACACAGTTCGC 38334 |||||||| ||| |||||||| || || | |||| || ||| || | ||||||| Sbjct 1973 CGACGACCTCGAGGTGCTGCTCG-CGGCG-GTCGAG-CTCGTGGTCTCCTCGCAGTTCGG 1917 Query 38335 GTCCGGATCGATGCTGCAGCGCAAGCTCAACATCGGGTACGCGCGCGCCGGCCGCTTACT 38394 ||| |||||||||||||||||||| | |||| | |||| ||||||||| | | Sbjct 1916 CTCCACCTCGATGCTGCAGCGCAAGCTTCGCGTCGGCTTCGCGAAGGCCGGCCGCCTCAT 1857 Query 38395 CGACGAGCTCGAAGGCCTCGACATCGTCGGCCCCGCCCAGGGCAGCAAGGCCCGAGAGGT 38454 ||| | | || || |||||||| ||||| || |||| |||||||| || || Sbjct 1856 GGACCTGATGGAGTCCCGGGACATCGTGGGCCCGTCCGAGGGATCGAAGGCCCGCGACGT 1797 Query 38455 ACTCGT 38460 ||||| Sbjct 1796 CCTCGT 1791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142387394308920