Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_031255.1 Length=46895 Score E Sequences producing significant alignments: (Bits) Value seq494 87.8 5e-13 >seq494 Length=2605 Score = 87.8 bits (96), Expect = 5e-13 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 39664 CAGTTCGCGTCCGGGTCGATGCTGCAGCGCAAGCTCCACATCGGCTACGCGCGCGCCGGC 39723 ||||||| ||| |||||||||||||||||||| | | |||||| |||| |||||| Sbjct 1924 CAGTTCGGCTCCACCTCGATGCTGCAGCGCAAGCTTCGCGTCGGCTTCGCGAAGGCCGGC 1865 Query 39724 CGTCTGCTCGACGAGCTCGAGGCGCTCGACATCGTCGGCCCCGCGCAGGGCAGCAAGGCC 39783 || || | ||| | | ||| | | |||||||| ||||| | |||| |||||| Sbjct 1864 CGCCTCATGGACCTGATGGAGTCCCGGGACATCGTGGGCCCGTCCGAGGGATCGAAGGCC 1805 Query 39784 CGCGAGGTCCTCG 39796 ||||| ||||||| Sbjct 1804 CGCGACGTCCTCG 1792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149935865322780