Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_031267.1 Length=42979 Score E Sequences producing significant alignments: (Bits) Value seq2028 260 4e-65 seq1401 132 1e-26 >seq2028 Length=10780 Score = 260 bits (288), Expect = 4e-65 Identities = 447/641 (70%), Gaps = 12/641 (2%) Strand=Plus/Minus Query 2356 TCCCCGTCGAGCCGTTGGGGTTCAAGCCGTGGACC-CGC-GAGTTCGGTGCG-TCACGCA 2412 |||| | || ||| ||| || ||||||| | || || | || || ||| || |||| Sbjct 4923 TCCCGGCTGACCCGCTGGTGTACAAGCCGCGTACGTCGAAGCGTATGGGGCGGTCGCGCA 4864 Query 2413 TCACTCGTCCGCTGATGTCGCTGCAGGAC--CGGGCGACGCACACGGTTATCCGCCTCGA 2470 |||| || || ||| || | ||| || || || || || || | |||||||| Sbjct 4863 TCACGCGCGCGGCGATCTCACACCAGTACGCCGCGCTTCGAGAAC--TTGTGCGCCTCGA 4806 Query 2471 GGGACACATGGACGTGTACAGCTTCCCGGAGCTGTGGATGCTGGGCGCGGACAACTCGGT 2530 | |||||||||||||| || ||||| |||| |||||||||| || | | | Sbjct 4805 AGCACACATGGACGTGTTCACGATCCCGCAGCTCATCCTGCTGGGCGCTAACGAAGCAAT 4746 Query 2531 GTTCAAGAACGAAGACGGATCGGTGAAGGCCGACTGGCGGGTCATGCTCGGCCGCATCAA 2590 ||||||||||| |||||| ||| ||||| |||| | || ||||| || Sbjct 4745 GTTCAAGAACGCAGACGGGTCGTACAAGGCGTCTTGGCAGATCGCTCTCGGGCGTGCGCT 4686 Query 2591 GGGCATCCCGGACGACGACGATGCGCCGTTAGAGCTCGCC----CGCCCGGACGTGAAGC 2646 || ||||| |||||||||||||| || | ||||| ||| |||||||||||| Sbjct 4685 GGCTATCCCCGACGACGACGATGCTCCTGCTG-GCTCGGATGGGCGCGCGGACGTGAAGC 4627 Query 2647 AATTCCCGGCGCAGTCTCCCGAACCACACCTGGCGGCGCTCAACGGGTACGCGAAGCTGT 2706 | || | |||||||| || | ||| ||||| ||||||||||||| || |||||||| Sbjct 4626 ACATCGCTGCGCAGTCGCCGGCACCGCACCTCGCGGCGCTCAACGCGTTGGCGAAGCTCG 4567 Query 2707 TCGCCCGCGAGGCCGGCCTCCCGGACTCGGCGCTGGCGATCACCGACTACTCCAACCCGA 2766 || |||||| || ||| || || |||| | ||||| || |||| | | ||||||| Sbjct 4566 AGGCGCGCGAGTACGACCTGCCCGATTCGGATTTCGCGATGACGGACTTCGCGAACCCGA 4507 Query 2767 CCTCGGCGGACGCCTACACCGAGTCGCGCGAGGATCTGATCTCCGAAGCCGAAGGCGCCA 2826 | |||||| | ||||| | ||| || ||| | ||||| |||| || || ||||| | Sbjct 4506 CTGGGGCGGATTCGTACACGGCGTCTCGGGAGAACTTGATCGCCGAGGCGGAGGGCGCGA 4447 Query 2827 CGGATGACTGGTCGCTGCCGATCCGGCGGGCCGTCGCACGGGGTTTGGCGATCCAGAACG 2886 | ||||||||||| |||||||||| || || | || | | |||| |||||||||| Sbjct 4446 CCGATGACTGGTCTGTGCCGATCCGCAACGCGGTGGTGCGTGCTCTGGCAATCCAGAACG 4387 Query 2887 GGCTGACCGAGGTGCCCAAGGAGTGGGCGACGATGGACACCCGTTGGCGCTCGCCGATGT 2946 | |||| || || ||| || |||||| |||| ||||| ||||| || ||||||| Sbjct 4386 GCGTGACGGAAGTCCCCGCTGATTGGGCGTCGATCGACACGAAGTGGCGTTCTCCGATGT 4327 Query 2947 TCCAGTCCCGCGCCGCGCAAGCTGACGCCGGCACGAAGCAG 2987 | ||| ||||| || || || ||| |||||||| Sbjct 4326 ATCTGTCGAAGGCCGCCGTCGCAGATGCGGGCGCGAAGCAG 4286 >seq1401 Length=3734 Score = 132 bits (146), Expect = 1e-26 Identities = 227/327 (69%), Gaps = 12/327 (4%) Strand=Plus/Minus Query 526 ATCGTCCTGTCGATCCCTCGTCAGGTCGGCAAGACGTACCTGGTCGCGTGCATCATCTTC 585 ||| || | |||||| || |||||||||||||||| | ||| || ||||||||| Sbjct 1274 ATCATCATCTCGATCTGCCGCCAGGTCGGCAAGACGTTCACCATCGGGTCGATCATCTTC 1215 Query 586 GCGCTGTGTCTGATTCACCCGAACCTGACGGTGATCTGGACGGCGCACCGGAAGACGACG 645 || || || | || |||||| || ||||| |||||||| ||||||| || | Sbjct 1214 GCCCTCTGCATCATCTTCCCGAAGCTCACGGTCATCTGGACCGCGCACC-----ACTCCC 1160 Query 646 GCGGCT-----GAGACGTTCC-GTCAGTTCGACGGGATGGCTCAGAAGCCGAAGGTCGCG 699 || || ||||||||| ||| | | | || | || ||||||| |||||| || Sbjct 1159 GCACCTCCAACGAGACGTTCGAGTCGCTGC-AGGGCTTCGCCCAGAAGCGGAAGGTGGCC 1101 Query 700 GCGCACGTCCGCCAGGTGCTGCGCGGCAAGGGTGATGAACGAATCCTGTTCAACAATGGG 759 |||| |||| ||| | | || | || || | | | ||| ||||| || || Sbjct 1100 CCGCATATCCGGCAGATCCGCCGAGTGAACGGGCAGCAGCAGATCACCTTCAAGAACGGC 1041 Query 760 TCTCGGATCATGTTCGGTGCCCGTGAGTCCGGGTTCGGCCGCGGCATGACCAACGTCGGC 819 || |||||||||||||||||||| |||||||| |||||||||||| | || |||| | Sbjct 1040 TCCCGGATCATGTTCGGTGCCCGCGAGTCCGGCTTCGGCCGCGGCTTCGCCGGTGTCGAC 981 Query 820 ATCCTCGTGCTTGACGAGGGTCAGATC 846 || | ||| || |||| |||||| Sbjct 980 GTCGTGGTGGCCGATGAGGCGCAGATC 954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137405211448140