Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3658 145 2e-29 seq3618 134 3e-26 seq3660 100 7e-16 >seq3658 Length=1447888 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || ||||||||||| ||||| || ||||| || || || | | |||||| Sbjct 42481 GAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGAGAGAGTTCT 42540 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || ||||| || ||||| ||||||||||| || |||||||| || | | ||| ||| Sbjct 42541 TCCGTCTTCAAGCTGCTTT--CCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATCCCT 42598 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||||| |||| | | |||| ||| || || || || Sbjct 42599 TCCTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCAGAAGCTTCAACCTCGAGG 42658 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| ||||||||||||| ||||| Sbjct 42659 GTGATGGTCTTTCCAGTGAGCGTCTTCACGAAGATTTGCAT 42699 Score = 143 bits (158), Expect = 6e-29 Identities = 166/222 (75%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||||||||||| || ||||||||||| || | | || | Sbjct 41250 GAGACGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTACG 41309 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| || ||||||||||| || |||||||| | | |||||| Sbjct 41310 TCCATCTTCGAGTTGCTTT--CCAGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCC 41367 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||| || || ||||||| | || | | |||| ||| ||| || || | | Sbjct 41368 TCTTTGTCTTGGATCTTGGCTTTGACATTTTCAATGGTGTCGGAAGCCTCCACCTCCAAA 41427 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || ||||||||||| ||||||| |||||| Sbjct 41428 GTGATAGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCATT 41469 Score = 140 bits (154), Expect = 7e-28 Identities = 166/223 (74%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || |||||||| || ||||| || ||||||||||| || | || || Sbjct 41750 CTGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAAGGTG 41809 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | |||||||| || ||||| || |||||||| || |||||||| || | | |||| Sbjct 41810 CGTCCATCTTCGAGTTGCTTT--CCAGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTC 41867 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| |||||||| || || ||| | || | | |||| || || || |||| Sbjct 41868 CTTCCTTGTCTTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGAGGCTTCGACCTCAA 41927 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || || ||||| ||||| ||||||| |||||| Sbjct 41928 GAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 41970 Score = 140 bits (154), Expect = 7e-28 Identities = 166/223 (74%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || ||||||||||| ||||| || ||||| ||||| || | | |||| Sbjct 43713 CTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGAAAGAGTT 43772 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || || ||||| || ||||| ||||||||||| || |||||||| || | | ||||| Sbjct 43773 CTTCCGTCTTCAAGCTGCTTT--CCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTC 43830 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | || || ||||| || || ||||||| |||| | | |||| ||| ||| || || | Sbjct 43831 CCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGGAAGCCTCCACCTCCA 43890 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || | || |||||||||| ||||| Sbjct 43891 AGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCAT 43933 Score = 132 bits (146), Expect = 1e-25 Identities = 160/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||||||||| ||||| |||||||| ||||| || | || || | ||||| Sbjct 42715 GAGAACGAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCCGACAAGGTCCGTCCATC 42774 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| |||||||| || || |||||||| || | | |||||| || || Sbjct 42775 CTCGAGTTGCTTT--CCGGCGAAAATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTTTG 42832 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || ||||| |||| | | | || ||| || || || || |||||| Sbjct 42833 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACCTCGAGGGTAATA 42892 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || ||||| ||||| ||||||| ||||||| Sbjct 42893 GTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 42928 Score = 127 bits (140), Expect = 5e-24 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| | ||| || || |||||||| ||||||||||| |||| | ||| | Sbjct 42253 GAGTCGGAGGACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTACG 42312 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| || || ||||| || || ||||| || | | ||||||| Sbjct 42313 TCCATCCTCAAGTTGCTTT--CCAGCAAAGATGAGTCTTTGCTGATCTGGAGGGATTCCT 42370 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || || || |||| | | |||| ||| || || || || Sbjct 42371 TCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCAGAAGCTTCAACCTCGAGG 42430 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| ||||||||||||| ||||| Sbjct 42431 GTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 42471 Score = 123 bits (136), Expect = 6e-23 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | || || ||||| || |||||||| |||||||||| ||||| Sbjct 43485 CTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATCGGACAAAGTA 43544 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||| || || ||||| || |||||||| || || ||||| || | | |||| Sbjct 43545 CGTCCATCCTCAAGTTGCTTT--CCAGCGAAGATGAGTCTTTGCTGATCTGGTGGAATTC 43602 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| ||||| || || ||||| |||| | | |||| || || || || | Sbjct 43603 CTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGCTTCAACCTCGA 43662 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || || || ||||| ||||||||||||| |||||| Sbjct 43663 GGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCATT 43706 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||||||||| ||||| |||||||||||||| || | || || | ||||| Sbjct 41029 AGAACGAGATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCCGACAAGGTCCGTCCATCC 41088 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| |||||||| || | | || ||||| | | ||| |||||||| | Sbjct 41089 TCGAGCTGCTTT--CCGGCGAAAATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTGT 41146 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || ||||| |||| | | |||| || || || || || || || | Sbjct 41147 CTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGG 41206 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||| ||||||| |||||| Sbjct 41207 TCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 41240 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||||||||| || ||||| || | | |||||| || || ||||| || ||| Sbjct 43063 CCAGCGAAGATAAGTCTTTGCTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTTGCC 43122 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| |||| | |||| ||| || ||||| || || ||||| || || || ||| Sbjct 43123 TTGACGTTCTCGATTGTGTCGGAAGCTTCCACTTCGAGTGTGATAGTCTTTCCAGTAAGA 43182 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||| ||||||| ||||||| Sbjct 43183 GTCTTGACGAAGATCTGCATT 43203 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || |||||||| || || ||||| || | | |||||||||||| |||||||| || Sbjct 41603 CCAGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTAGCC 41662 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| |||| | | |||| || || ||||| || || || || || || || | | Sbjct 41663 TTGACGTTCTCAATGGTGTCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAA 41722 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||| ||||||| ||||||| Sbjct 41723 GTCTTGACGAAGATCTGCATT 41743 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| || |||||||| || | | |||||||||||| ||||||||||| Sbjct 42101 TTACCAGCAAAGATGAGTCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTTG 42160 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || ||| |||| | | |||| || || || || || || || || || || ||| Sbjct 42161 GCCTTCACATTCTCGATGGTGTCAGAGGCTTCGACCTCGAGTGTGATGGTCTTTCCGGTG 42220 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| | |||||| Sbjct 42221 AGCGTTTTCACGAAAATCTGCAT 42243 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || ||||||||||| || || || || | | |||||| || || ||||| || ||| Sbjct 43338 CCAGCGAAGATAAGTCTTTGTTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTTGCC 43397 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||||| |||| | |||| ||| || ||||| || || ||||| || || || ||| Sbjct 43398 TTGACGTTCTCGATTGTGTCGGAAGCTTCCACTTCGAGTGTGATAGTCTTTCCAGTAAGA 43457 Query 152085 GTCTTCACGAAGACCTGCATT 152105 ||||| ||||||| ||||||| Sbjct 43458 GTCTTGACGAAGATCTGCATT 43478 >seq3618 Length=512689 Score = 134 bits (148), Expect = 3e-26 Identities = 164/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| | ||| || || ||||| || ||||||||||| |||| | ||| | Sbjct 495171 GAGTCGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACG 495112 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| || |||||||| || || ||||| || || | ||||||| Sbjct 495111 TCCATCCTCAAGTTGCTTT--CCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCT 495054 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||| |||| | |||| ||| || || || || Sbjct 495053 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGG 494994 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || ||||| ||||||||||||| |||||| Sbjct 494993 GTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCATT 494952 Score = 134 bits (148), Expect = 3e-26 Identities = 164/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| | ||| || || ||||| || ||||||||||| |||| | ||| | Sbjct 509355 GAGTCGGAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACG 509296 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||||| |||||||| || || ||||| || || | ||||||| Sbjct 509295 TCCATCCTCAAGTTGCTTTTCA--GCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCT 509238 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||| |||| | |||| ||| || || || || Sbjct 509237 TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGG 509178 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || ||||| ||||||||||||| |||||| Sbjct 509177 GTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATTTGCATT 509136 >seq3660 Length=1640336 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 ||||||||||| || || ||||| || | | ||||||||||| ||||| || || Sbjct 486263 CCGGCGAAGATCAGTCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCC 486322 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 |||||| |||| | | | || || ||| ||||| || |||||||| || ||||| ||| Sbjct 486323 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGA 486382 Query 152085 GTCTTCACGAAGACCTGCAT 152104 ||||| ||||||| ||||| Sbjct 486383 GTCTTGACGAAGATTTGCAT 486402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153766545182570