Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3658 127 1e-24 seq3618 114 9e-21 >seq3658 Length=1447888 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT- 44165 |||||| ||||| || | | || || ||||| || |||||| ||||||||||| | Sbjct 41740 CATTCCACCTCTGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTC 41799 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || | || | ||| | || || || ||||| || || ||||| | | ||||||||||| Sbjct 41800 CGACAAGGT-GCGTCCATCTTCGAGTTGCTTTCCAGCGAAGATGAGTCTCTGCTGATCTG 41858 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | |||||||| || ||||| ||||| || | |||||||| | || || Sbjct 41859 GTGGAATTCCTTCCTTGTCTTGAATCTTAGCCTTCACATTTTCAATGGTGTCAGAGGCTT 41918 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || |||||||| ||||||||||| |||||||| ||||| Sbjct 41919 CGACCTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 41970 Score = 123 bits (136), Expect = 2e-23 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || || ||||| || |||||||||||||||||| || | | || | || | || || Sbjct 41032 ACGAGATGAAGAGTTGACTCCTTTTGGATGTTGTAGTCCGACAAGGTC-CGTCCATCCTC 41090 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| || |||||||| || || |||| || | |||||||| || Sbjct 41091 GAGCTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTG 41150 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | |||| | |||||||| | || ||| ||||| | || || |||| Sbjct 41151 GATCTTGGCCTTGAC-GTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATGGTCT 41209 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||||||||| |||||||| ||||| Sbjct 41210 TTCCAGTGAGGGTCTTGACGAAGATCTGCAT 41240 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| || || ||| ||| || ||||||||||| |||| || || | || || Sbjct 42263 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCA 42322 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||| | | |||||||||| ||| | |||||||| || Sbjct 42323 AGTTGCTTTCCAGCAAAGATGAGTCTTTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGG 42382 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | |||| | |||||||| | | ||| ||||| | || || ||||| Sbjct 42383 ATCTTGGCCTTC-ACGTTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGGTCTT 42441 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||||||||||||||||||||||||| Sbjct 42442 TCCAGTGAGGGTCTTCACGAAGATTTGCAT 42471 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | |||| ||| || || ||||||||||| |||||||| Sbjct 43475 CATTCCTCCTCTGAGACGGAGAACCAAGTGGAGTGTAGATTCCTTTTGGATATTGTAATC 43534 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | || | || || || ||||| || || ||||| | | |||||||||| Sbjct 43535 GGACAAAGTACGTCCATCCTCAAGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGG 43594 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| || ||||| || | | |||| | |||||||| | || || Sbjct 43595 TGGAATTCCTTCCTTGTCTTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCCGAGGCTT 43653 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || |||||||| |||||||||||||||||||||||||| Sbjct 43654 CAACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATTTGCAT 43705 Score = 120 bits (132), Expect = 2e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||| ||||| || || || | ||| | |||| || Sbjct 42491 ACGAGATGAAGAGTGGACTCCTTCTGGATATTATAGTCCGAGAGAGTTCTTCCGTCTTCA 42550 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | | ||||||||||| || | |||||||| || Sbjct 42551 AGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTGG 42610 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | ||| | |||||||| | | ||| ||||| | || || ||||| Sbjct 42611 ATCTTG-GCTTTGACATTCTCAATGGTGTCAGAAGCTTCAACCTCGAGGGTGATGGTCTT 42669 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| |||||||||||||||||||| Sbjct 42670 TCCAGTGAGCGTCTTCACGAAGATTTGCAT 42699 Score = 118 bits (130), Expect = 8e-22 Identities = 173/240 (72%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | || || ||||| ||| |||||| ||||| ||||| Sbjct 43700 TTGCATTCCTCCTCTGAGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTA 43759 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| | |||| || |||||||| ||||| ||||| | | ||||||| Sbjct 43760 GTCCGAAAGAGTT--CTTCCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGA 43817 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 |||| || | || || || || ||||| |||| | ||| | |||||||||| Sbjct 43818 TCTGGTGGGATTCCCTCTTTGTCTTGGATCTT-GGCTTTGACATTCTCAATGGTGTCGGA 43876 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | |||||||||| || || || ||||| || | || |||||||||||||||||||| Sbjct 43877 AGCCTCCACCTCCAAGGTGATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCATGAT 43936 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || |||||| ||||||||||| || | |||| || | || || Sbjct 41260 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAGAGTGTACGTCCATCTTCG 41319 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || ||||| | | ||||| |||| || | || || || || Sbjct 41320 AGTTGCTTTCCAGCGAAGATAAGTCTTTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGG 41379 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| || | || | |||||||||| | |||||||||| || || |||||| Sbjct 41380 ATCTTGGCTTTGACATTTTCAATGGTGTCGGAAGCCTCCACCTCCAAAGTGATAGTCTTT 41439 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| |||||||||||||| Sbjct 41440 CCGGTGAGAGTCTTGACGAAGATTTGCAT 41468 Score = 105 bits (116), Expect = 5e-18 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || || ||||| ||| |||||||||||| ||||| || | | || | || | || || Sbjct 42719 ACGAGATGAAGAGTGGACTCCTTTTGGATATTGTAGTCCGACAAGGTC-CGTCCATCCTC 42777 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||| || || | | ||||||||||| || | || || || || Sbjct 42778 GAGTTGCTTTCCGGCGAAAATGAGTCTCTGCTGATCTGGTGGGATTCCCTCTTTGTCTTG 42837 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || | | |||| | ||||| |||| | ||| ||||| | ||||| |||| Sbjct 42838 GATCTT-GGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACCTCGAGGGTAATAGTCT 42896 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||||||||| |||||||| ||||| Sbjct 42897 TTCCAGTGAGGGTCTTGACGAAGATCTGCAT 42927 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || |||||||| | | ||||||||||| ||| | |||||||| || || || Sbjct 42100 CTTACCAGCAAAGATGAGTCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAATTTT 42159 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||||| | | |||||||| | || ||| ||||| | || || |||||||| || Sbjct 42160 GGCCTTCACATTCTCGATGGTGTCAGAGGCTTCGACCTCGAGTGTGATGGTCTTTCCGGT 42219 Query 44314 GAGGGTCTTCACGAAGATTTGCATG 44338 ||| || |||||||| || |||||| Sbjct 42220 GAGCGTTTTCACGAAAATCTGCATG 42244 >seq3618 Length=512689 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| || || ||| |||||| ||||||||||| |||| || || | || || Sbjct 495161 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCA 495102 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || ||||| | | |||||||||| || | |||||||| || Sbjct 495101 AGTTGCTTTCCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTGTCTTGG 495042 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | || ||||||| | ||| ||||| | || || ||||| Sbjct 495041 ATCTTGGCCTTGAC-GTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATGGTCTT 494983 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||||||||||||||||||||||||| Sbjct 494982 TCCGGTGAGGGTCTTCACGAAGATTTGCAT 494953 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| || || ||| |||||| ||||||||||| |||| || || | || || Sbjct 509345 ACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTACGTCCATCCTCA 509286 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| | || ||||| | | |||||||||| || | |||||||| || Sbjct 509285 AGTTGCTTTTCAGCGAAGATGAGTCTTTGCTGATCTGCTGGGATTCCTTCCTTGTCTTGG 509226 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | |||| | || ||||||| | ||| ||||| | || || ||||| Sbjct 509225 ATCTTGGCCTTGAC-GTTCTCGATAGTGTCGGAAGCTTCGACCTCGAGGGTGATGGTCTT 509167 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||||||||||||||||||||||||| Sbjct 509166 TCCGGTGAGGGTCTTCACGAAGATTTGCAT 509137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359974298304390