Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3658 183 7e-41 seq3618 174 4e-38 seq3660 113 1e-19 >seq3658 Length=1447888 Score = 183 bits (202), Expect = 7e-41 Identities = 167/208 (80%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || |||||||||||||| ||| ||| ||| Sbjct 41237 CAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTCGAAGCCTCTGAC 41178 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 41177 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAA 41118 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || ||||||||||| |||||||| |||||| |||| |||| | || || ||| | Sbjct 41117 CGTTTGATTTTCGCCGGAAAGCAGCTCGAGGATGGACGGAC-CTTGTCGGACTACAACAT 41059 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 |||||| || ||||| || ||||| ||| Sbjct 41058 CCAAAAGGAGTCAACTCTTCATCTCGTT 41031 Score = 183 bits (202), Expect = 7e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| ||||| || |||||||||||||| ||| ||| ||| Sbjct 43702 CAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCCTCGGAC 43643 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| || ||||| |||||||| || || || |||||| Sbjct 43642 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAA 43583 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||| ||||| || || || |||||| | ||| | ||||||| || || Sbjct 43582 AGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTTTGTCCGATTACAATATC 43523 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| ||||| || | ||| | | |||||| Sbjct 43522 CAAAAGGAATCTACACTCCACTTGGTTCTCCGTCTCAGA 43484 Score = 179 bits (198), Expect = 9e-40 Identities = 164/207 (79%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| ||||| || |||||||||||||| ||| || ||| Sbjct 42696 CAAATCTTCGTGAAGACGCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCTTCTGAC 42637 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| |||||| ||||| || ||||| ||||| ||||| || || ||||| Sbjct 42636 ACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAGCAG 42577 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| ||||| ||||| ||||| ||||| | || ||||| || Sbjct 42576 AGACTCATCTTCGCCGGAAAGCAGCTTGAAGACGGAAGAACTCTCTCGGACTATAATATC 42517 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || ||||| ||| Sbjct 42516 CAGAAGGAGTCCACTCTTCATCTCGTT 42490 Score = 179 bits (198), Expect = 9e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| | || |||||||| |||||| | |||||||| || ||| Sbjct 43930 CAAATCTTCGTGAAAACGTTGACTGGAAAAACCATCACCTTGGAGGTGGAGGCTTCCGAC 43871 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| |||||| ||||| || |||||||| |||||||| || || ||||| Sbjct 43870 ACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAGCAG 43811 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| ||||| ||||| ||||| |||||| | || || || || Sbjct 43810 AGACTCATCTTCGCCGGAAAGCAGCTTGAAGACGGAAGAACTCTTTCGGACTACAATATC 43751 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||||| ||| | | |||||| Sbjct 43750 CAGAAGGAGTCCACTCTTCATCTCGTTCTCCGTCTCAGA 43712 Score = 178 bits (196), Expect = 3e-39 Identities = 160/201 (80%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| ||||| || |||||||||||||| ||| || ||| Sbjct 42468 CAAATCTTCGTGAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTTGAAGCTTCTGAC 42409 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| || ||||| |||||||||||||| || |||||| Sbjct 42408 ACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCAGCAA 42349 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || ||||| || || || |||||| | |||||| |||| || ||| || Sbjct 42348 AGACTCATCTTTGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAACATC 42289 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| || || || ||| Sbjct 42288 CAGAAAGAGTCCACCCTCCAT 42268 Score = 165 bits (182), Expect = 2e-35 Identities = 162/208 (78%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| ||||| || ||||| | |||||||| || ||| Sbjct 41465 CAAATCTTCGTCAAGACTCTCACCGGAAAGACTATCACTTTGGAGGTGGAGGCTTCCGAC 41406 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| ||||| || |||||||| |||||||| || ||||||||| Sbjct 41405 ACCATTGAAAATGTCAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGACCAGCAA 41346 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||| ||||| || |||||||||||| | || || | || || ||| || Sbjct 41345 AGACTTATCTTCGCTGGAAAGCAACTCGAAGATGGACGTACACTCTCTGACTACAACATC 41286 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 41285 CAGAAGGAGTCTACTCTTCA-CTTGGTT 41259 Score = 161 bits (178), Expect = 2e-34 Identities = 162/208 (78%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || || ||||||||||| ||| || || Sbjct 42924 CAGATCTTCGTCAAGACCCTCACTGGAAAGACTATTACCCTCGAGGTCGAAGCTTCCGAT 42865 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| || |||||||| |||||||| || || ||||| Sbjct 42864 ACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAGCAG 42805 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| || ||||||||||| || ||||| |||||| |||| |||| | || || || | Sbjct 42804 AGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGACGGAC-CTTGTCGGACTACAATAT 42746 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 |||||| || || || || ||||| ||| Sbjct 42745 CCAAAAGGAGTCCACTCTTCATCTCGTT 42718 Score = 150 bits (166), Expect = 4e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || ||||| || ||||| ||| ||| ||| Sbjct 41967 CAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTCGAAGCCTCTGAC 41908 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || |||||||| ||||| |||||||| || || || ||||| Sbjct 41907 ACCATTGAAAATGTGAAGGCTAAGATTCAAGACAAGGAAGGAATTCCACCAGATCAGCAG 41848 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 |||| |||||||| ||||| || |||||||||||| | || |||| | || || ||| | Sbjct 41847 AGACTCATCTTCGCTGGAAAGCAACTCGAAGATGGACGCAC-CTTGTCGGACTACAACAT 41789 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||| || || || || || ||||| ||| | | |||||| Sbjct 41788 CCAGAAGGAGTCGACCCTTCATCTCGTTCTCCGTCTCAGA 41749 Score = 131 bits (144), Expect = 4e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| ||||| || ||||| |||||||| ||| ||| ||| Sbjct 42240 CAGATTTTCGTGAAAACGCTCACCGGAAAGACCATCACACTCGAGGTCGAAGCCTCTGAC 42181 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || || ||||| ||||| |||||||||||||| || ||||| Sbjct 42180 ACCATCGAGAATGTGAAGGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCAGCAG 42121 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||| ||||| || || || Sbjct 42120 AGACTCATCTTTGCTGGTAA 42101 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || ||||| ||||| |||||| || ||| Sbjct 43199 CAGATCTTCGTCAAGACTCTTACTGGAAAGACTATCACACTCGAAGTGGAAGCTTCCGAC 43140 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| |||||| || |||||||| |||||||| || || |||||| Sbjct 43139 ACAATCGAGAACGTCAAGGCAAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAGCAA 43080 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||||| || Sbjct 43079 AGACTTATCTTCGCTGG 43063 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||| | || ||||| || ||||||||||| || ||| ||| ||| Sbjct 41739 CAGATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCGGAC 41680 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| |||||||| ||||| ||||||||||| || || |||||| Sbjct 41679 ACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 41620 Query 178044 CGACTTATCTTCGCCGG 178060 |||| |||||||| || Sbjct 41619 AGACTCATCTTCGCTGG 41603 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || ||||| ||||| |||||| || ||| Sbjct 43474 CAGATCTTCGTCAAGACTCTTACTGGAAAGACTATCACACTCGAAGTGGAAGCTTCCGAC 43415 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| |||||| || |||||||| |||||||| || || || ||| Sbjct 43414 ACAATCGAGAACGTCAAGGCAAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAACAA 43355 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||||| || Sbjct 43354 AGACTTATCTTCGCTGG 43338 >seq3618 Length=512689 Score = 174 bits (192), Expect = 4e-38 Identities = 159/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| ||||| || |||||||||||||| ||| || ||| Sbjct 494956 CAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTCCGAC 495015 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| ||||||||||| | || |||||| Sbjct 495016 ACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATCAGCAA 495075 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||| ||||| || || || |||||| | |||||| |||| || ||| || Sbjct 495076 AGACTCATCTTCGCTGGAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAACATC 495135 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 495136 CAGAAGGAGTCCACCCTCCAT 495156 Score = 168 bits (186), Expect = 2e-36 Identities = 158/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| ||||| || |||||||||||||| ||| || ||| Sbjct 509140 CAAATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTCGAGGTCGAAGCTTCCGAC 509199 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||||||||| ||||| || ||||| ||||||||||| | || |||||| Sbjct 509200 ACTATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCAGCAGATCAGCAA 509259 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||| | ||| || || || |||||| | |||||| |||| || ||| || Sbjct 509260 AGACTCATCTTCGCTGAAAAGCAACTTGAGGATGGACGTACTCTTTCCGACTACAACATC 509319 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 509320 CAGAAGGAGTCCACCCTCCAT 509340 >seq3660 Length=1640336 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || || |||||||| || || ||| || Sbjct 486399 CAAATCTTCGTCAAGACTCTGACGGGTAAGACTATTACCCTCGAAGTCGAGGCCTCCGAT 486340 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || ||||| |||||||| || || || |||||| Sbjct 486339 ACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAGCAA 486280 Query 178044 CGACTTATCTTCGCCGG 178060 |||| ||||||||||| Sbjct 486279 AGACTGATCTTCGCCGG 486263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203674598301980