Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20remanei_20[refseq_20GCF_5F000149515.1_202007-07-19] 3,670 sequences; 145,442,736 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3658 93.3 4e-14 >seq3658 Length=1447888 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||||||||| || || ||||| || || || | Sbjct 43716 AGACGGAGAACGAGATGAAGAGTGGACTCCTTCTGGATATTGTAGTCCGAAAGAGTTCTT 43775 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| |||||||| || || | ||| || || | || | | ||| Sbjct 43776 CCGTCTTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCCTCT 43835 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 ||||| ||| || |||| || || | ||||| | ||||||||||| || Sbjct 43836 TTGTCTTGGATCTTG-GCTTTGACATTCTCAATGGTGTCGGAAGCCTCCACCTCCAAGGT 43894 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| || |||| ||| || ||||| || |||||| Sbjct 43895 GATGGTTTTTCCAGTCAACGTTTTCACGAAGATTTGCATG 43934 Score = 89.7 bits (98), Expect = 5e-13 Identities = 165/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 41626 TACATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTT 41685 ||||| | | || || || ||||| | || ||||| || || |||||| || ||||| Sbjct 41005 TACAT-ATCTCCTCCACGAAGACGAAGAACGAGATGAAGAGTTGACTCCTTTTGGATGTT 41063 Query 41686 ATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTG 41745 ||||| || | ||| || | || ||||||||||| |||||||| |||| || ||||| Sbjct 41064 GTAGTCCGACAAGGTCCGTCCATCCTCGAGCTGCTTTCCGGCGAAAATCAAACGTTGTTG 41123 Query 41746 GTC-CGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGC 41804 ||| | |||| | || |||||||| ||| || ||| | | | ||||| Sbjct 41124 GTCTGGTGGGATCCCT-TCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCAG 41182 Query 41805 TCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || ||||| | || || || || || || || ||||| ||||| |||||||| Sbjct 41183 AGGCTTCGACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 41240 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| ||||| ||||| ||| Sbjct 41242 CCTCCACGGAGACGGAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGAG 41301 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||| ||||| || ||||| || || | || ||||| | || Sbjct 41302 AGTGTACGTCCATCTTCGAGTTGCTTTCCAGCGAAGATAAGTCTTTGCTGGTCTGGTGGG 41361 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | ||| ||||| ||| || |||| || || | ||||| | |||||| Sbjct 41362 ATTCCCTCTTTGTCTTGGATCTTG-GCTTTGACATTTTCAATGGTGTCGGAAGCCTCCAC 41420 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| ||||| || ||||| Sbjct 41421 CTCCAAAGTGATAGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 41468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462282791804000