Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1545 93.3 9e-14 seq14404 89.7 1e-12 seq12639 89.7 1e-12 seq9598 89.7 1e-12 seq5979 89.7 1e-12 seq4667 89.7 1e-12 seq4652 89.7 1e-12 seq2915 89.7 1e-12 seq2610 89.7 1e-12 seq1994 89.7 1e-12 seq1964 89.7 1e-12 seq1510 89.7 1e-12 seq1235 89.7 1e-12 seq1123 89.7 1e-12 seq476 89.7 1e-12 seq392 89.7 1e-12 seq189 89.7 1e-12 seq163 89.7 1e-12 seq127 89.7 1e-12 seq69 89.7 1e-12 seq9 89.7 1e-12 seq5498 86.0 1e-11 seq433 84.2 5e-11 >seq1545 Length=22242 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||| ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||| Sbjct 9395 GCTCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTC 9454 Query 165766 GAGCCCCACGATGGGC 165781 ||||||| | ||||| Sbjct 9455 GAGCCCCGCATTGGGC 9470 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 6392 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 6451 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 6452 CCCGCATTGGGC 6463 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 7983 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 7924 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 7923 CCCGCATTGGGC 7912 >seq14404 Length=239 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 93 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 34 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 33 CCCGCATTGGGC 22 >seq12639 Length=402 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 402 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 343 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 342 CCCGCATTGGGC 331 >seq9598 Length=1277 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 9 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 68 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 69 CCCGCATTGGGC 80 >seq5979 Length=4631 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 4612 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 4553 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 4552 CCCGCATTGGGC 4541 >seq4667 Length=7044 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 991 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1050 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 1051 CCCGCATTGGGC 1062 >seq4652 Length=7080 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 5338 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 5397 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 5398 CCCGCATTGGGC 5409 >seq2915 Length=12637 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 3179 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 3238 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 3239 CCCGCATTGGGC 3250 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 9790 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 9731 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 9730 CCCGCATTGGGC 9719 >seq2610 Length=14260 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 8633 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 8574 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 8573 CCCGCATTGGGC 8562 >seq1994 Length=18307 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 9285 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 9344 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 9345 CCCGCATTGGGC 9356 >seq1964 Length=18485 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 1490 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1549 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 1550 CCCGCATTGGGC 1561 >seq1510 Length=22543 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 5330 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 5271 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 5270 CCCGCATTGGGC 5259 >seq1235 Length=26062 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 11167 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 11108 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 11107 CCCGCATTGGGC 11096 >seq1123 Length=27797 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 7228 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 7287 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 7288 CCCGCATTGGGC 7299 >seq476 Length=46397 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 27444 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 27503 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 27504 CCCGCATTGGGC 27515 >seq392 Length=52454 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 16798 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 16739 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 16738 CCCGCATTGGGC 16727 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 31537 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 31596 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 31597 CCCGCATTGGGC 31608 >seq189 Length=76359 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 26975 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 26916 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 26915 CCCGCATTGGGC 26904 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 38253 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 38194 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 38193 CCCGCATTGGGC 38182 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 39933 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 39874 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 39873 CCCGCATTGGGC 39862 >seq163 Length=81324 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 56051 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 55992 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 55991 CCCGCATTGGGC 55980 >seq127 Length=90042 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 139 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 198 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 199 CCCGCATTGGGC 210 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 1879 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1938 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 1939 CCCGCATTGGGC 1950 >seq69 Length=115317 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 93048 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 93107 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 93108 CCCGCATTGGGC 93119 >seq9 Length=218193 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 29847 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 29906 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 29907 CCCGCATTGGGC 29918 >seq5498 Length=5416 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACGA 165776 |||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||| | Sbjct 4420 TAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGCCCCGCAT 4361 Query 165777 TGGGC 165781 ||||| Sbjct 4360 TGGGC 4356 >seq433 Length=49269 Score = 84.2 bits (92), Expect = 5e-11 Identities = 223/336 (66%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 230305 GACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTA 230364 ||||| ||||| || | | |||| | || | || || | |||||| |||||||| Sbjct 30069 GACGAAGGTCTTCACCGTGACTTCGCCTGCCTCCTCTACTCGATGCTCCAAAACAAGCT- 30011 Query 230365 CCATTCGAGACGG--TCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCA 230422 || || ||| | || | | |||||| || || || | | || | |||||| Sbjct 30010 -CACTCAAGAGCGCATCTACGAGATCATTCGTGATGCCGTCGCCATTGAGCAAGAGTTCC 29952 Query 230423 TTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACGCTGAACTTATGGGACAGTAC 230481 || || ||| ||||| |||| | | || || |||||| | || ||| |||||| Sbjct 29951 TTACCGAGGCTCTTCCA-GTCGACATGATCGGAATGAACTGTCGCCTGATGTCCCAGTAC 29893 Query 230482 ATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCT 230541 || || || || ||||| | | ||| | | || | |||||| ||||||| Sbjct 29892 ATTGAGTTTGTCGCCGATCATCTGCTTGCCGAGTTGGGATGCGAGAAGTTGTACAAAGTG 29833 Query 230542 AAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAA 230601 ||||||||||| | || |||||| ||| || | | || ||||||||||||||||| Sbjct 29832 AAGAACCCCTTCGACTTCATGGAGAACATCTCTATCGATGGAAAGACCAACTTCTTCGAG 29773 Query 230602 AAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||| ||| || || || | || ||||| ||| Sbjct 29772 AAGCGCGTCTCCGAGTACCAACGTCCGGGTGTCATG 29737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057617162020430