Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1864 109 4e-19 >seq1864 Length=19213 Score = 109 bits (120), Expect = 4e-19 Identities = 191/276 (69%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || || || || |||| || ||||||||||||||||| |||||| |||| || Sbjct 14362 GGAGATCTCGGACCAGTTTATGGATTCCAGTGGAGACATTTCGGAGCGAAATACGTGGAT 14303 Query 18849 TGTCAATCAAACTATTTACAG--CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAA 18906 ||||| || |||| || | |||||| |||||||| || || || | || Sbjct 14302 TGTCACACAGACTA--CACTGGACAAGGAGTCGATCAGTTGGCTGAGGTGATTCGTCAAA 14245 Query 18907 TTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCC 18966 | ||| | || || ||| || |||| || || ||| | ||||||||| |||| | Sbjct 14244 TCAAAGAGGAACCGGACAGCAGAAGAATCATCATGTCGGCGTGGAATCCATCGGATCTTG 14185 Query 18967 CCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAAT 19026 |||||| | || || ||||||||| | |||||||| ||||||| || || || | Sbjct 14184 GGCAAATGGTCTTGCCGCCGTGTCACACGATGTGTCAGTTCTACGTTGAGAATGGAGAGT 14125 Query 19027 TATCCTGCCAAGTATACCAGAGATCGGGGGATATGG 19062 | |||||||| | || || ||| || ||||||| Sbjct 14124 TGTCCTGCCAGTTGTATCAAAGAAGTGGAGATATGG 14089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399429694877745