Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1864 102 6e-17 >seq1864 Length=19213 Score = 102 bits (112), Expect = 6e-17 Identities = 304/458 (66%), Gaps = 22/458 (5%) Strand=Plus/Plus Query 101817 CCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCAT-CACAGACATAAAAT 101875 ||||||| | ||||||||||| || ||||| | || ||||| | || || || || Sbjct 14089 CCATATCTCCACTTCTTTGATACAACTGGCAGGACAACTCTCCATTCTCA-ACGTAGAAC 14147 Query 101876 TGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCA 101935 |||| | ||||| |||||||| ||||||| || || || |||||| || Sbjct 14148 TGACACATCGTGTGACACGGCGGCAAGACCATTTGCCCAAGATCCGATGGATTCCACGCC 14207 Query 101936 CACATTAACATCCTTCTATCTGTAGGGTTTGTTTTT-ATAGTATCAATCAACTGTTTTAA 101994 |||| | || ||||| |||| |||| | ||| || | ||||| || || Sbjct 14208 GACATGATGATTCTTCTG-CTGTCCGGTTCCTCTTTGATTTGACGAATCACCTCAGCCAA 14266 Query 101995 TTGGTCAACTCCTTCTCCTTTATAATC-GCGCC-CAACACCTTTATATTCTGCTCCGAAA 102052 || || ||||||| ||| | || || | | ||| | ||| ||| ||||||||| Sbjct 14267 CTGATCGACTCCTTGTCCAGTGTAGTCTGTGTGACAATCCACGTAT-TTC-GCTCCGAAA 14324 Query 102053 TGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCA 102112 || |||||||| |||||||| || ||||| ||||||||||| || | || ||| Sbjct 14325 TGTCTCCACTGGAATCCATAAACTGGTCCGAGATCTCCTTCTTCGCGAGAGGTGAATCCA 14384 Query 102113 AGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCAC-------GCCAGC 102165 || ||||| | ||| | | | ||||||| |||||||| | ||| |||| | Sbjct 14385 AGATTATCGAGAAACGCGCGATCTCCATTCTTCTCCCAAATCTTCACATTTTTGGCCATC 14444 Query 102166 TGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAAC 102225 | || ||| | ||| || ||||| || ||||| | || ||||||| ||| Sbjct 14445 ----AAAAG---TTTCCCGTCGGTTGATCCGGAAATGAACCAAAGCAACTCTTCAAGAAC 14497 Query 102226 ACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAA 102263 || |||| | ||||| || || || | |||||||| Sbjct 14498 GCCCTTCCAGTACACTCTTTTCGTCGTCAGAAGTGGAA 14535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361184009647511