Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq433 150 2e-31 seq1197 136 4e-27 seq1737 109 6e-19 >seq433 Length=49269 Score = 150 bits (166), Expect = 2e-31 Identities = 251/359 (70%), Gaps = 8/359 (2%) Strand=Plus/Minus Query 116806 CGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGAT 116865 ||| || ||| | | ||||| |||| ||||||| || | ||||||||| || || || Sbjct 30471 CGAACGCTTCTCGAATGAGGTCAAGGTCTCCGAGGCTCGCTTCTTCTACGGTTTCCAAAT 30412 Query 116866 CGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTC 116925 |||||| |||||| | || ||||| ||||| || | |||||||| || ||| | ||| Sbjct 30411 CGCCATCGAGAACATCCATTCGGAGATGTACTCAAAGCTCATCGAGACATACATCCGCGA 30352 Query 116926 TTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCG--TGCGTCAAAGAG 116983 | | ||||| | | |||| ||||||||| ||| || | | |||| || Sbjct 30351 TGAGAAGGAGCGTCACACACTGTTCAACGCCATCTT--CGAGTTCGAATTCATCAAGAAG 30294 Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 |||||||| ||||| || ||||| | | | |||| | |||| |||| | ||| Sbjct 30293 AAGGCCGACTGGGCTCTTAAATGGATTTCGGATAAGAAGGCGTCGTTCGCCGAGAGACTG 30234 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 | || ||||| |||||||||||| ||||||| || ||||||| |||| |||||| Sbjct 30233 ATTGCTTTCGCCGCCGTCGAGGGCATCTTCTTCAGTGGATCTTTCGCCTCCATCTTTTGG 30174 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGA--CTTTCAGCAACGAGCTCATCTCCAGG 117160 | ||||| ||||| | ||||| || ||| | ||| ||| ||| | ||||| ||| Sbjct 30173 TTGAAGAAGCGCGGATTGATGCCAGGATTGACGCATTC--CAATGAGTTGATCTCGAGG 30117 >seq1197 Length=26491 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || || ||||||||| |||| |||||||| | Sbjct 23611 AATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTC 23552 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | | | | |||| |||||| || || | ||||| || || ||||| | || | Sbjct 23551 CGATACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATC 23493 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||| ||||||||| ||| || || ||||| || || | |||||| | || |||| Sbjct 23492 AGCAAAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCTTGTCTGATTACA 23433 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| | || || ||||| || | ||| | || || || Sbjct 23432 ACATCCAGAAGGAGTCGACTCTCCATCTCGTTCTTCGCCTCAGAGGAGG 23384 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| |||||| | || || ||||| |||||| | || || || || | Sbjct 24343 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACGATCACCCTGGAGGTGGAGGCTTCT 24284 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||||| | ||||| ||||| ||||| | ||||| Sbjct 24283 GACACCATCGAGAACG-TCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCA 24225 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| ||||||||| ||| || || ||||| || || | | || || |||||||| Sbjct 24224 GCAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTTTCGGACTACAA 24165 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 24164 CATCCAGAAGGAGTCGACTCTCCATCTCGT 24135 Score = 129 bits (142), Expect = 6e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| |||| || |||||| | Sbjct 21854 ATGCAGATCTTCGTCAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTTGAAGCCTCT 21795 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||||| ||||| | ||||| || || ||||| | || || Sbjct 21794 GATACCATCGAGAACG-TCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCA 21736 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || ||||| || |||| |||||| | ||||||||| Sbjct 21735 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCACCTTGTCCGACTACAA 21676 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||| |||||| | || || ||||| || Sbjct 21675 CATCCAAAAGGAGTCGACCCTTCATCTCGT 21646 Score = 123 bits (136), Expect = 3e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || ||||| || || |||||||| | || || |||||| | Sbjct 22364 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTTGAAGCCTC 22305 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | ||||| || || || || | || | Sbjct 22304 TGACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATC 22246 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| ||||||||| ||| || || ||||| || || | || |||||| |||||||| Sbjct 22245 AGCAGAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCCGACTACA 22186 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| |||| || || Sbjct 22185 ACATCCAAAAGGAGTCCACCCTTCA 22161 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| ||||| || || || ||||| | || ||||| || | Sbjct 22880 AATGCAGATTTTCGTGAAAACTCTCACTGGAAAGACTATCACTTTGGAAGTCGAGGCTTC 22821 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| |||||| || |||| ||||| || || || || | ||||| Sbjct 22820 TGACACCATCGAAAATGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCACCAGACCA 22761 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||||| ||| || || ||||| || || | | || ||| ||||||||| Sbjct 22760 ACAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTCTCCGACTACAA 22701 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||| |||| || || | ||| | ||| Sbjct 22700 TATCCAGAAGGAATCCACTCTCCACTTGGTGCTCCGC 22664 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || ||||||||| |||| ||||||||| || Sbjct 23382 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 23323 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| |||||| || || | ||||| || || ||||| | || || Sbjct 23322 GATACCATTGAAAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 23264 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||| |||| ||| || ||||| || || || | | || ||| ||||||||| Sbjct 23263 ACAGAGACTTATCTTCGCCGGAAAACAACTCGAGGATGGAAGAACTCTCTCCGACTACAA 23204 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||| |||| || || Sbjct 23203 TATCCAGAAGGAATCCACTCTTCA 23180 >seq1737 Length=20200 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || ||||| || || || ||| |||| ||||| || || Sbjct 10008 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACGATTACCCTCGAGGTCGAGGCTTCC 9949 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || || | ||||| || || || || | || ||| Sbjct 9948 GATACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAG 9889 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| || || || || || || | || || ||| |||||||||| Sbjct 9888 CAACGCTTGATCTTCGCCGGAAAGCAACTTGAGGATGGACGTACTCTCTCCGACTACAAC 9829 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 9828 ATCCAGAAGGAGTCCACCCTTCA 9806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515120915497360