Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1197 125 6e-24 seq1737 105 6e-18 seq433 84.2 2e-11 >seq1197 Length=26491 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| ||||| |||||||| ||| || ||||| ||||||||||| |||||| Sbjct 21658 GTCGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCGAGCTGCTTTCCA 21717 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||||||| || || || || ||||||||| ||||| || Sbjct 21718 GCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCCTTG 21777 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | | || ||||||| ||| | || || ||||| ||||| Sbjct 21778 ACGTTCTCGATGGTATCAGAGGCTTCAACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTC 21837 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 21838 TTGACGAAGATCTGCAT 21854 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| ||||| |||||||| ||| | || || ||||||| Sbjct 22155 ACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGTCCATCCTCG 22214 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| ||||||| | ||||||||| || || || || ||||||||| Sbjct 22215 AGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 22274 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | | || ||||| | || | || || Sbjct 22275 ATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACCTCAAGAGTGATGGTCTTT 22334 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || |||||||| Sbjct 22335 CCGGTGAGGGTCTTCACGAAGATCTGCAT 22363 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | | ||||||||||| || || || || || || ||||| ||| Sbjct 22651 TACCTCCACGAAGGCGGAGCACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGG 22710 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| | |||||||||||| ||||| ||| ||||||| | || || || || | Sbjct 22711 AGAGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGGTG 22770 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| ||| || || || | ||||| |||||| | ||||| Sbjct 22771 GAATTCCTTCCTTGTCCTGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGA 22830 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || || |||||||| || ||||||||||| Sbjct 22831 CTTCCAAAGTGATAGTCTTTCCAGTGAGAGTTTTCACGAAAATCTGCAT 22879 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| || | ||| | |||||||||||| Sbjct 24141 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCGAGCTGC 24200 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||| ||| ||||||| | ||||| || || || || |||||||||||| ||||| Sbjct 24201 TTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATTTTG 24260 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | ||| ||||| | ||| | |||||| || ||| Sbjct 24261 GCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCACCTCCAGGGTGATCGTTTTTCCAGTC 24320 Query 118716 AGAGTTTTTACAAAAATCTGCATG 118739 | ||||| || || || |||||| Sbjct 24321 AACGTTTTGACGAAGATTTGCATG 24344 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || ||||||||||| || ||||| |||||| ||||| Sbjct 23408 TGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCCTCAAGCTGC 23467 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||| ||| ||||||| | |||||||| || || || || ||||||||| || || Sbjct 23468 TTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTG 23527 Query 118656 TGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||| || | ||| ||||| |||| ||| | || || || || Sbjct 23528 GCCTTGACGTTCTCGATGGTATCGGAAGCT-TCGACTTCGAGGGTGATGGTCTTTCCAGT 23586 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 23587 GAGGGTCTTGACGAAGATCTGCAT 23610 >seq1737 Length=20200 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| | ||| || |||||| Sbjct 9800 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCA 9859 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||| ||| |||| | || |||||||| || || || || |||||||| Sbjct 9860 AGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGG 9919 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | ||||||||||| ||| | ||| || Sbjct 9920 ATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGACCTCGAGGGTAATCGTCTTA 9979 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || |||||||| || || || || |||||| || Sbjct 9980 CCCGTCAGAGTCTTGACGAAGATTTGCATGACT 10012 >seq433 Length=49269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 45074 GAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGT--TGGTGG 45131 || ||||| ||||| ||| || || || | |||||||| || | ||| || | | Sbjct 29979 GATGCCGTCGCCATTGAGCAAGAGTTCCTTACCGAGGCTCTTCCAG--TCGACATGATCG 29922 Query 45132 GAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGTCC 45191 |||||||| ||||| |||||||||||||||||||||||| ||| || | | Sbjct 29921 GAATGAACTGTCGCCTGATGTCCCAGTACATTGAGTTTGTCGCCGATCATCTGCTTGCCG 29862 Query 45192 AGTTAAAGTATCC--CAAGATGTACTATACTG-AGAACCCATTCGAGTTTATGAACAATA 45248 |||| | || | ||| ||||| | | || ||||||| ||||| || ||| | || | Sbjct 29861 AGTT--GGGATGCGAGAAGTTGTAC-AAAGTGAAGAACCCCTTCGACTTCATGGAGAACA 29805 Query 45249 TTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAGCGT 45304 | || | || || || || || || || ||||| |||||| ||| ||| | ||| Sbjct 29804 TCTCTATCGATGGAAAGACCAACTTCTTCGAGAAGCGCGTCTCCGAGTACCAACGT 29749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433749710392612